CSM3/YMR048W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Csm3p domain/motif information see the external links section.

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Shared domains/motifs
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This table lists proteins that share domains/motifs in common with those found in Csm3p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Csm3p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no shared domains/motifs predicted for Csm3p .

Unique domains/motifs
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This table lists domains/motifs that are unique to Csm3p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Csm3p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Csm3p
Database source Accession number Description
ProDom PD089639 YMT8_YEAST_Q04659;
PANTHER PTHR13220 TIMELESS INTERACTING-RELATED
PANTHER PTHR13220:SF2 GB DEF: HYPOTHETICAL 36.4 KDA PROTEIN IN NUP116-FAR3 INTERGENIC REGION
Pfam PF07962 Swi3

Transmembrane Domains
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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Csm3p .

Signal Peptide(s)
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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Csm3p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Csm3p .