FMS1/YMR020W Domains/Motifs and Signal Peptides 
To directly search external databases for Fms1p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Fms1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Fms1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Fms1p | ||
|---|---|---|
| Protein | Motifs in common with Fms1p | Other motifs in this protein (but not in Fms1p ) |
| Bna4p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
Pfam PF01494: FAD_binding_3 PRINTS PR00420: RNGMNOXGNASE PANTHER PTHR13789:SF3: KYNURENINE 3-MONOOXYGENASE PANTHER PTHR13789: MONOOXYGENASE |
| Nde2p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PRINTS PR00368: FADPNR Pfam PF07992: Pyr_redox_2 Pfam PF00070: Pyr_redox PANTHER PTHR22915:SF4: NADH DEHYDROGENASE-RELATED PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED |
| Glt1p | Gene3D G3DSA:3.50.50.60: no description |
Gene3D G3DSA:3.60.20.10: no description Gene3D G3DSA:3.20.20.70: no description Gene3D G3DSA:2.160.20.60: no description Gene3D G3DSA:1.10.1060.10: no description Gene3D G3DSA:3.40.50.720: no description TIGRFAMs TIGR01317: GOGAT_sm_gam: glutamate synthase, NADH/NADPH, smal PRINTS PR00419: ADXRDTASE Pfam PF01645: Glu_synthase Pfam PF00310: GATase_2 Pfam PF04898: Glu_syn_central Pfam PF01493: GXGXG Pfam PF07992: Pyr_redox_2 SUPERFAMILY SSF51395: FMN-linked oxidoreductases SUPERFAMILY SSF56235: N-terminal nucleophile aminohydrolases (Ntn hydrolases) SUPERFAMILY SSF69336: Alpha subunit of glutamate synthase, C-terminal domain SUPERFAMILY SSF51971: Nucleotide-binding domain SUPERFAMILY SSF46548: alpha-helical ferredoxin PIR superfamily PIRSF000187: Glutamate synthase (NADH/NADPH), eukaryotic type PANTHER PTHR11938:SF1: GLUTAMATE SYNTHASE PANTHER PTHR11938: FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| Trr1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
Pfam PF07992: Pyr_redox_2 PANTHER PTHR22912:SF48: OXIDOREDUCTASE, PUTATIVE PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE PRINTS PR00469: PNDRDTASEII PRINTS PR00368: FADPNR TIGRFAMs TIGR01292: TRX_reduct: thioredoxin-disulfide reductase |
| Arh1p | Gene3D G3DSA:3.50.50.60: no description |
PRINTS PR00419: ADXRDTASE Gene3D G3DSA:3.40.50.720: no description SUPERFAMILY SSF51971: Nucleotide-binding domain PANTHER PTHR11938:SF4: FERREDOXIN/FERREDOXIN--NADP REDUCTASE-RELATED PANTHER PTHR11938: FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| Frd1p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
TIGRFAMs TIGR01813: flavo_cyto_c: flavocytochrome c PANTHER PTHR11632:SF3: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Pfam PF00890: FAD_binding_2 Gene3D G3DSA:3.90.700.10: no description |
| Hem14p | PANTHER PTHR10742: AMINE OXIDASE Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF54373: FAD-linked reductases, C-terminal domain SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PANTHER PTHR10742:SF16: PROTOPORPHYRINOGEN OXIDASE Gene3D G3DSA:1.10.3110.10: no description Gene3D G3DSA:3.90.660.20: no description Pfam PF13450: NAD_binding_8 TIGRFAMs TIGR00562: proto_IX_ox: protoporphyrinogen oxidase |
| Gdi1p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain SUPERFAMILY SSF54373: FAD-linked reductases, C-terminal domain Gene3D G3DSA:3.50.50.60: no description |
Pfam PF00996: GDI PANTHER PTHR11787: RAB GDP-DISSOCIATION INHIBITOR PRINTS PR00891: RABGDIREP PRINTS PR00892: RABGDI Gene3D G3DSA:3.30.519.10: no description Gene3D G3DSA:1.10.405.10: no description |
| Lpd1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PRINTS PR00411: PNDRDTASEI PRINTS PR00368: FADPNR PANTHER PTHR22912:SF20: DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE Gene3D G3DSA:3.30.390.30: no description TIGRFAMs TIGR01350: lipoamide_DH: dihydrolipoyl dehydrogenase SUPERFAMILY SSF55424: FAD/NAD-linked reductases, dimerisation (C-terminal) domain Pfam PF02852: Pyr_redox_dim Pfam PF07992: Pyr_redox_2 |
| Mto1p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
PANTHER PTHR11806: GLUCOSE INHIBITED DIVISION PROTEIN A Pfam PF01134: GIDA Pfam PF13932: GIDA_assoc_3 TIGRFAMs TIGR00136: gidA: tRNA uridine 5-carboxymethylaminomethyl modi |
| Thi4p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
TIGRFAMs TIGR00292: TIGR00292: thiazole biosynthesis enzyme Pfam PF01946: Thi4 PANTHER PTHR10617:SF54: THIAZOLE BIOSYNTHETIC ENZYME, MITOCHONDRIAL PANTHER PTHR10617: ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE |
| Erg1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
Pfam PF08491: SE PANTHER PTHR10835: SQUALENE MONOOXYGENASE PRINTS PR00420: RNGMNOXGNASE |
| Coq6p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
PANTHER PTHR13789:SF40: UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6 PANTHER PTHR13789: MONOOXYGENASE PRINTS PR00420: RNGMNOXGNASE TIGRFAMs TIGR01989: COQ6: ubiquinone biosynthesis monooxygenase COQ6 TIGRFAMs TIGR01988: Ubi-OHases: ubiquinone biosynthesis hydroxylase, U Pfam PF01494: FAD_binding_3 |
| Tda3p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
PANTHER PTHR13847:SF7: FAD OXIDOREDUCTASE PANTHER PTHR13847: FAD NAD BINDING OXIDOREDUCTASES Pfam PF01266: DAO |
| Trr2p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
Pfam PF07992: Pyr_redox_2 TIGRFAMs TIGR01292: TRX_reduct: thioredoxin-disulfide reductase PANTHER PTHR22912:SF48: OXIDOREDUCTASE, PUTATIVE PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE PRINTS PR00469: PNDRDTASEII PRINTS PR00368: FADPNR |
| Fmo1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
Pfam PF00743: FMO-like PANTHER PTHR23023:SF4: DIMETHYLANILINE MONOOXYGENASE (FLAVIN-CONTAINING MONOOXYGENASE) PANTHER PTHR23023: DIMETHYLANILINE MONOOXYGENASE PRINTS PR00370: FMOXYGENASE |
| Gut2p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PRINTS PR01001: FADG3PDH PANTHER PTHR11985:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11985: GLYCEROL-3-PHOSPHATE DEHYDROGENASE Pfam PF01266: DAO |
| Yjl045wp | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
TIGRFAMs TIGR01816: sdhA_forward: succinate dehydrogenase, flavoprotei TIGRFAMs TIGR01812: sdhA_frdA_Gneg: succinate dehydrogenase or fumarat Gene3D G3DSA:3.90.700.10: no description Gene3D G3DSA:1.20.58.100: no description Gene3D G3DSA:4.10.80.40: no description Pfam PF00890: FAD_binding_2 Pfam PF02910: Succ_DH_flav_C SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain SUPERFAMILY SSF46977: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain PANTHER PTHR11632:SF5: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| Osm1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PANTHER PTHR11632:SF3: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT Pfam PF00890: FAD_binding_2 Gene3D G3DSA:3.90.700.10: no description SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain TIGRFAMs TIGR01813: flavo_cyto_c: flavocytochrome c |
| Sdh1p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain SUPERFAMILY SSF46977: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Gene3D G3DSA:3.90.700.10: no description Gene3D G3DSA:1.20.58.100: no description Gene3D G3DSA:4.10.80.40: no description Pfam PF00890: FAD_binding_2 Pfam PF02910: Succ_DH_flav_C TIGRFAMs TIGR01816: sdhA_forward: succinate dehydrogenase, flavoprotei TIGRFAMs TIGR01812: sdhA_frdA_Gneg: succinate dehydrogenase or fumarat PANTHER PTHR11632:SF5: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| Ndi1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
Pfam PF07992: Pyr_redox_2 Pfam PF00070: Pyr_redox PRINTS PR00368: FADPNR PANTHER PTHR22915:SF4: NADH DEHYDROGENASE-RELATED PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED |
| Nde1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PRINTS PR00368: FADPNR Pfam PF07992: Pyr_redox_2 Pfam PF00070: Pyr_redox PANTHER PTHR22915:SF4: NADH DEHYDROGENASE-RELATED PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED |
| Aif1p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
Pfam PF00070: Pyr_redox PANTHER PTHR22915:SF5: APOPTOSIS-INDUCING FACTOR (AIF)-LIKE MITCHONDRION-ASSOCIATED INDUCER OF DEATH (P53-RESPONSIVE GENE 3) (AMID PROTEIN) PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED PRINTS PR00368: FADPNR |
| Cir2p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain SUPERFAMILY SSF54373: FAD-linked reductases, C-terminal domain Gene3D G3DSA:3.50.50.60: no description |
Pfam PF05187: ETF_QO Pfam PF13450: NAD_binding_8 SUPERFAMILY SSF54862: 4Fe-4S ferredoxins PANTHER PTHR10617:SF1: ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE PANTHER PTHR10617: ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE |
| Mrs6p | SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain Gene3D G3DSA:3.50.50.60: no description |
PIR superfamily PIRSF037514: Rab protein geranylgeranyltransferase, component A, fungal type PRINTS PR00894: YEASTMRS6P PRINTS PR00891: RABGDIREP PANTHER PTHR11787: RAB GDP-DISSOCIATION INHIBITOR Pfam PF00996: GDI Gene3D G3DSA:3.30.519.10: no description |
| Irc15p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PANTHER PTHR22912:SF20: DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE Gene3D G3DSA:3.30.390.30: no description PRINTS PR00411: PNDRDTASEI PRINTS PR00368: FADPNR Pfam PF02852: Pyr_redox_dim Pfam PF07992: Pyr_redox_2 SUPERFAMILY SSF55424: FAD/NAD-linked reductases, dimerisation (C-terminal) domain SUPERFAMILY SSF51735: NAD(P)-binding Rossmann-fold domains |
| Glr1p | Gene3D G3DSA:3.50.50.60: no description SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain |
PANTHER PTHR22912:SF27: GLUTATHIONE REDUCTASE PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE Pfam PF07992: Pyr_redox_2 Pfam PF02852: Pyr_redox_dim Gene3D G3DSA:3.30.390.30: no description SUPERFAMILY SSF55424: FAD/NAD-linked reductases, dimerisation (C-terminal) domain TIGRFAMs TIGR01421: gluta_reduc_1: glutathione-disulfide reductase PRINTS PR00411: PNDRDTASEI PRINTS PR00368: FADPNR |
This table lists domains/motifs that are unique to Fms1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Fms1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Fms1p | ||
|---|---|---|
| Database source | Accession number | Description |
| Gene3D | G3DSA:3.90.660.10 | no description |
| PANTHER | PTHR10742:SF25 | POLYAMINE OXIDASE FMS1 |
| Pfam | PF01593 | Amino_oxidase |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Fms1p .
