FMS1/YMR020W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Fms1p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Fms1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Fms1p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Fms1p
Protein Motifs in common with Fms1p Other motifs in this protein (but not in Fms1p )
Bna4p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00420: RNGMNOXGNASE
PANTHER PTHR13789:SF3: KYNURENINE 3-MONOOXYGENASE
PANTHER PTHR13789: MONOOXYGENASE
Pfam PF01494: FAD_binding_3
Nde2p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00368: FADPNR
Pfam PF07992: Pyr_redox_2
Pfam PF00070: Pyr_redox
PANTHER PTHR22915:SF4: NADH DEHYDROGENASE-RELATED
PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED
Glt1p Gene3D G3DSA:3.50.50.60: no description
PIR superfamily PIRSF000187: Glutamate synthase (NADH/NADPH), eukaryotic type
PRINTS PR00419: ADXRDTASE
PANTHER PTHR11938:SF1: GLUTAMATE SYNTHASE
PANTHER PTHR11938: FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
TIGRFAMs TIGR01317: GOGAT_sm_gam: glutamate synthase, NADH/NADPH, smal
SUPERFAMILY SSF51395: FMN-linked oxidoreductases
SUPERFAMILY SSF56235: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SUPERFAMILY SSF69336: Alpha subunit of glutamate synthase, C-terminal domain
SUPERFAMILY SSF51971: Nucleotide-binding domain
SUPERFAMILY SSF46548: alpha-helical ferredoxin
Gene3D G3DSA:3.60.20.10: no description
Gene3D G3DSA:3.20.20.70: no description
Gene3D G3DSA:2.160.20.60: no description
Gene3D G3DSA:1.10.1060.10: no description
Gene3D G3DSA:3.40.50.720: no description
Pfam PF01645: Glu_synthase
Pfam PF00310: GATase_2
Pfam PF04898: Glu_syn_central
Pfam PF01493: GXGXG
Pfam PF14691: Fer4_20
Pfam PF07992: Pyr_redox_2
Trr1p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00469: PNDRDTASEII
PRINTS PR00368: FADPNR
Pfam PF07992: Pyr_redox_2
PANTHER PTHR22912:SF48: OXIDOREDUCTASE, PUTATIVE
PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE
TIGRFAMs TIGR01292: TRX_reduct: thioredoxin-disulfide reductase
Arh1p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51971: Nucleotide-binding domain
Gene3D G3DSA:3.40.50.720: no description
PANTHER PTHR11938:SF4: FERREDOXIN/FERREDOXIN--NADP REDUCTASE-RELATED
PANTHER PTHR11938: FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
PRINTS PR00419: ADXRDTASE
Frd1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Pfam PF00890: FAD_binding_2
Gene3D G3DSA:3.90.700.10: no description
PANTHER PTHR11632:SF3: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
TIGRFAMs TIGR01813: flavo_cyto_c: flavocytochrome c
Hem14p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF54373: FAD-linked reductases, C-terminal domain
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PANTHER PTHR10742: AMINE OXIDASE
Pfam PF13450: NAD_binding_8
TIGRFAMs TIGR00562: proto_IX_ox: protoporphyrinogen oxidase
Gene3D G3DSA:1.10.3110.10: no description
Gene3D G3DSA:3.90.660.20: no description
PANTHER PTHR10742:SF16: PROTOPORPHYRINOGEN OXIDASE
Gdi1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
SUPERFAMILY SSF54373: FAD-linked reductases, C-terminal domain
Gene3D G3DSA:3.50.50.60: no description
PANTHER PTHR11787: RAB GDP-DISSOCIATION INHIBITOR
Gene3D G3DSA:3.30.519.10: no description
Gene3D G3DSA:1.10.405.10: no description
PRINTS PR00891: RABGDIREP
PRINTS PR00892: RABGDI
Pfam PF00996: GDI
Lpd1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF55424: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Pfam PF02852: Pyr_redox_dim
Pfam PF07992: Pyr_redox_2
TIGRFAMs TIGR01350: lipoamide_DH: dihydrolipoyl dehydrogenase
Gene3D G3DSA:3.30.390.30: no description
PANTHER PTHR22912:SF20: DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED
PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE
PRINTS PR00411: PNDRDTASEI
PRINTS PR00368: FADPNR
Mto1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
TIGRFAMs TIGR00136: gidA: tRNA uridine 5-carboxymethylaminomethyl modi
PANTHER PTHR11806: GLUCOSE INHIBITED DIVISION PROTEIN A
Pfam PF01134: GIDA
Pfam PF13932: GIDA_assoc_3
Thi4p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
TIGRFAMs TIGR00292: TIGR00292: thiazole biosynthesis enzyme
PANTHER PTHR10617:SF54: THIAZOLE BIOSYNTHETIC ENZYME, MITOCHONDRIAL
PANTHER PTHR10617: ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE
Pfam PF01946: Thi4
Erg1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
Pfam PF08491: SE
PANTHER PTHR10835: SQUALENE MONOOXYGENASE
PRINTS PR00420: RNGMNOXGNASE
Coq6p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
TIGRFAMs TIGR01989: COQ6: ubiquinone biosynthesis monooxygenase COQ6
TIGRFAMs TIGR01988: Ubi-OHases: ubiquinone biosynthesis hydroxylase, U
PRINTS PR00420: RNGMNOXGNASE
PANTHER PTHR13789:SF40: UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6
PANTHER PTHR13789: MONOOXYGENASE
Pfam PF01494: FAD_binding_3
Tda3p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
PANTHER PTHR13847:SF7: FAD OXIDOREDUCTASE
PANTHER PTHR13847: FAD NAD BINDING OXIDOREDUCTASES
Pfam PF01266: DAO
Trr2p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00469: PNDRDTASEII
PRINTS PR00368: FADPNR
Pfam PF07992: Pyr_redox_2
PANTHER PTHR22912:SF48: OXIDOREDUCTASE, PUTATIVE
PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE
TIGRFAMs TIGR01292: TRX_reduct: thioredoxin-disulfide reductase
Fmo1p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00370: FMOXYGENASE
Pfam PF00743: FMO-like
PANTHER PTHR23023:SF4: DIMETHYLANILINE MONOOXYGENASE (FLAVIN-CONTAINING MONOOXYGENASE)
PANTHER PTHR23023: DIMETHYLANILINE MONOOXYGENASE
Gut2p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PANTHER PTHR11985:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR11985: GLYCEROL-3-PHOSPHATE DEHYDROGENASE
PRINTS PR01001: FADG3PDH
Pfam PF01266: DAO
Yjl045wp SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
PANTHER PTHR11632:SF5: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
SUPERFAMILY SSF46977: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
TIGRFAMs TIGR01816: sdhA_forward: succinate dehydrogenase, flavoprotei
TIGRFAMs TIGR01812: sdhA_frdA_Gneg: succinate dehydrogenase or fumarat
Gene3D G3DSA:3.90.700.10: no description
Gene3D G3DSA:1.20.58.100: no description
Gene3D G3DSA:4.10.80.40: no description
Pfam PF00890: FAD_binding_2
Pfam PF02910: Succ_DH_flav_C
Osm1p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.90.700.10: no description
PANTHER PTHR11632:SF3: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Pfam PF00890: FAD_binding_2
TIGRFAMs TIGR01813: flavo_cyto_c: flavocytochrome c
Sdh1p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Pfam PF00890: FAD_binding_2
Pfam PF02910: Succ_DH_flav_C
TIGRFAMs TIGR01816: sdhA_forward: succinate dehydrogenase, flavoprotei
TIGRFAMs TIGR01812: sdhA_frdA_Gneg: succinate dehydrogenase or fumarat
PANTHER PTHR11632:SF5: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
PANTHER PTHR11632: SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
Gene3D G3DSA:3.90.700.10: no description
Gene3D G3DSA:1.20.58.100: no description
Gene3D G3DSA:4.10.80.40: no description
SUPERFAMILY SSF56425: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
SUPERFAMILY SSF46977: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
Ndi1p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00368: FADPNR
Pfam PF07992: Pyr_redox_2
Pfam PF00070: Pyr_redox
PANTHER PTHR22915:SF4: NADH DEHYDROGENASE-RELATED
PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED
Nde1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
PRINTS PR00368: FADPNR
Pfam PF07992: Pyr_redox_2
Pfam PF00070: Pyr_redox
PANTHER PTHR22915:SF4: NADH DEHYDROGENASE-RELATED
PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED
Aif1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
PANTHER PTHR22915:SF5: APOPTOSIS-INDUCING FACTOR (AIF)-LIKE MITCHONDRION-ASSOCIATED INDUCER OF DEATH (P53-RESPONSIVE GENE 3) (AMID PROTEIN)
PANTHER PTHR22915: NADH DEHYDROGENASE-RELATED
PRINTS PR00368: FADPNR
Pfam PF00070: Pyr_redox
Cir2p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
SUPERFAMILY SSF54373: FAD-linked reductases, C-terminal domain
Gene3D G3DSA:3.50.50.60: no description
PANTHER PTHR10617:SF1: ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE
PANTHER PTHR10617: ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE
Pfam PF05187: ETF_QO
Pfam PF13450: NAD_binding_8
SUPERFAMILY SSF54862: 4Fe-4S ferredoxins
Mrs6p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
Gene3D G3DSA:3.30.519.10: no description
PANTHER PTHR11787: RAB GDP-DISSOCIATION INHIBITOR
PIR superfamily PIRSF037514: Rab protein geranylgeranyltransferase, component A, fungal type
PRINTS PR00894: YEASTMRS6P
PRINTS PR00891: RABGDIREP
Pfam PF00996: GDI
Irc15p Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
PRINTS PR00411: PNDRDTASEI
PRINTS PR00368: FADPNR
Pfam PF02852: Pyr_redox_dim
Pfam PF07992: Pyr_redox_2
PANTHER PTHR22912:SF20: DIHYDROLIPOAMIDE DEHYDROGENASE-RELATED
PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE
Gene3D G3DSA:3.30.390.30: no description
SUPERFAMILY SSF55424: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
SUPERFAMILY SSF51735: NAD(P)-binding Rossmann-fold domains
Glr1p SUPERFAMILY SSF51905: FAD/NAD(P)-binding domain
Gene3D G3DSA:3.50.50.60: no description
SUPERFAMILY SSF55424: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
TIGRFAMs TIGR01421: gluta_reduc_1: glutathione-disulfide reductase
Pfam PF07992: Pyr_redox_2
Pfam PF02852: Pyr_redox_dim
PANTHER PTHR22912:SF27: GLUTATHIONE REDUCTASE
PANTHER PTHR22912: DISULFIDE OXIDOREDUCTASE
Gene3D G3DSA:3.30.390.30: no description
PRINTS PR00411: PNDRDTASEI
PRINTS PR00368: FADPNR

Unique domains/motifs


This table lists domains/motifs that are unique to Fms1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Fms1p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Fms1p
Database source Accession number Description
Gene3D G3DSA:3.90.660.10 no description
PANTHER PTHR10742:SF25 POLYAMINE OXIDASE FMS1
Pfam PF01593 Amino_oxidase

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Fms1p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Fms1p .


The following external links can be used to directly search external databases for domain/motif information for Fms1p .