RPL6A/YML073C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpl6ap domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpl6ap , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl6ap domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl6ap
Protein	Motifs in common with Rpl6ap	Other motifs in this protein (but not in Rpl6ap )
Rpl27bp	Gene3D G3DSA:2.30.30.30: no description	Pfam PF01777: Ribosomal_L27e ProDom PD009396: Q3E773_YEAST_Q3E773; PANTHER PTHR10497:SF0: 60S RIBOSOMAL PROTEIN L27 PANTHER PTHR10497: 60S RIBOSOMAL PROTEIN L27
Hyp2p	Gene3D G3DSA:2.30.30.30: no description	Gene3D G3DSA:2.40.50.140: no description TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A Pfam PF01287: eIF-5a Pfam PF00467: KOW PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF003025: Translation initiation factor eIF-5A
Rml2p	Gene3D G3DSA:2.30.30.30: no description	Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 PANTHER PTHR13691:SF5: 50S RIBOSOMAL PROTEIN L2 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 TIGRFAMs TIGR01171: rplB_bact: ribosomal protein L2 SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins
Rpl2ap	Gene3D G3DSA:2.30.30.30: no description	PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types
Rpl26bp	Gene3D G3DSA:2.30.30.30: no description	Pfam PF00467: KOW TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER SUPERFAMILY SSF50104: Translation proteins SH3-like domain
Rpl14bp	Gene3D G3DSA:2.30.30.30: no description	PANTHER PTHR11127:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11127: 60S RIBOSOMAL PROTEIN L14 Pfam PF01929: Ribosomal_L14e Pfam PF00467: KOW
Rpl27ap	Gene3D G3DSA:2.30.30.30: no description	PANTHER PTHR10497: 60S RIBOSOMAL PROTEIN L27 ProDom PD009396: Q3E773_YEAST_Q3E773; Pfam PF01777: Ribosomal_L27e
Rpl2bp	Gene3D G3DSA:2.30.30.30: no description	PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:4.10.950.10: no description
Anb1p	Gene3D G3DSA:2.30.30.30: no description	TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A PIR superfamily PIRSF003025: Translation initiation factor eIF-5A PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50104: Translation proteins SH3-like domain SUPERFAMILY SSF50249: Nucleic acid-binding proteins Pfam PF01287: eIF-5a Pfam PF00467: KOW
Rpl14ap	Gene3D G3DSA:2.30.30.30: no description	Pfam PF01929: Ribosomal_L14e Pfam PF00467: KOW PANTHER PTHR11127:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11127: 60S RIBOSOMAL PROTEIN L14
Rpl26ap	Gene3D G3DSA:2.30.30.30: no description	TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER Pfam PF00467: KOW SUPERFAMILY SSF50104: Translation proteins SH3-like domain
Rpl6bp	Pfam PF01159: Ribosomal_L6e Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR10715: 60S RIBOSOMAL PROTEIN L6	none
Mrpl40p	Gene3D G3DSA:2.30.30.30: no description	SMART SM00739: KOW (Kyprides, Ouzounis, Woese) motif.

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpl6ap . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl6ap domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rpl6ap .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpl6ap .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpl6ap .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rpl6ap .