RCF1/YML030W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rcf1p domain/motif information see the external links section.


Click on image for expanded interactive view
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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Rcf1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rcf1p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Rcf1p
Protein Motifs in common with Rcf1p Other motifs in this protein (but not in Rcf1p )
Rcf2p Pfam PF04588: HIG_1_N
none

Unique domains/motifs


This table lists domains/motifs that are unique to Rcf1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rcf1p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Rcf1p
Database source Accession number Description
PANTHER PTHR12297 HYPOXIA-INDUCBILE GENE 1 (HIG1)-RELATED
PANTHER PTHR12297:SF1 GB DEF: HYPOTHETICAL 18.5 KDA PROTEIN IN NDC1-TSA1 INTERGENIC REGION

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view) Amino Acid Coordinate(s)
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32 - 54
64 - 86

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rcf1p .


The following external links can be used to directly search external databases for domain/motif information for Rcf1p .