USA1/YML029W Domains/Motifs and Signal Peptides 
To directly search external databases for Usa1p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Usa1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Usa1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Usa1p | ||
|---|---|---|
| Protein | Motifs in common with Usa1p | Other motifs in this protein (but not in Usa1p ) |
| Shp1p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
SMART SM00553: Domain present in Saccharomyces cerevisiae S SMART SM00166: Domain present in ubiquitin-regulatory prote Pfam PF08059: SEP Pfam PF00789: UBX PANTHER PTHR23333:SF5: UBX DOMAIN CONTAINING PROTEIN PANTHER PTHR23333: UBX DOMAIN CONTAINING PROTEIN SUPERFAMILY SSF102848: NSFL1 (p97 ATPase) cofactor p47, SEP domain SUPERFAMILY SSF46934: UBA-like Gene3D G3DSA:1.10.8.10: no description |
| Atg8p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
PANTHER PTHR10969:SF17: AUTOPHAGY-RELATED PROTEIN 8 PANTHER PTHR10969: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED Pfam PF02991: Atg8 |
| Npl4p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
Pfam PF05021: NPL4 Pfam PF05020: zf-NPL4 PIR superfamily PIRSF010052: Polyubiquitin-tagged protein recognition complex, Npl4 component PANTHER PTHR12710: NUCLEAR PROTEIN LOCALIZATION 4 |
| Atg12p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
Pfam PF04110: APG12 PANTHER PTHR13385: AUTOPHAGY PROTEIN 12 |
| Ubx7p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
PANTHER PTHR13020:SF3: SUBFAMILY NOT NAMED PANTHER PTHR13020: UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAINING Pfam PF00789: UBX SMART SM00166: Domain present in ubiquitin-regulatory prote |
| Ste50p | SUPERFAMILY SSF54236: Ubiquitin-like |
Gene3D G3DSA:1.10.150.50: no description Pfam PF09235: Ste50p-SAM Pfam PF00788: RA SUPERFAMILY SSF47769: SAM/Pointed domain SMART SM00314: Ras association (RalGDS/AF-6) domain |
| Ubx3p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
SMART SM00594: no description SMART SM00166: Domain present in ubiquitin-regulatory prote Pfam PF00789: UBX PANTHER PTHR23322:SF14: UBX DOMAIN CONTAINING PROTEIN (FRAGMENT) PANTHER PTHR23322: FAS-ASSOCIATED PROTEIN |
| Rub1p | Gene3D G3DSA:3.10.20.90: no description Pfam PF00240: ubiquitin SUPERFAMILY SSF54236: Ubiquitin-like |
PRINTS PR00348: UBIQUITIN PANTHER PTHR10666:SF16: SUBFAMILY NOT NAMED PANTHER PTHR10666: UBIQUITIN SMART SM00213: Ubiquitin homologues |
| Ubx5p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
Pfam PF13899: Thioredoxin_7 Pfam PF00789: UBX SMART SM00594: no description SMART SM00166: Domain present in ubiquitin-regulatory prote Gene3D G3DSA:1.10.8.10: no description Gene3D G3DSA:3.40.30.10: no description PANTHER PTHR23322:SF6: FAS-ASSOCIATED FACTOR-RELATED PANTHER PTHR23322: FAS-ASSOCIATED PROTEIN SUPERFAMILY SSF46934: UBA-like |
| Esc2p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
PANTHER PTHR10562: SMALL UBIQUITIN-RELATED MODIFIER Pfam PF11976: Rad60-SLD |
| Smt3p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
Pfam PF11976: Rad60-SLD PANTHER PTHR10562: SMALL UBIQUITIN-RELATED MODIFIER SMART SM00213: Ubiquitin homologues |
| Rad23p | Pfam PF00240: ubiquitin SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
Pfam PF00627: UBA Pfam PF09280: XPC-binding SUPERFAMILY SSF101238: XPC-binding domain SUPERFAMILY SSF46934: UBA-like Gene3D G3DSA:1.10.8.10: no description Gene3D G3DSA:1.10.10.540: no description PRINTS PR01839: RAD23PROTEIN PANTHER PTHR10621:SF0: UV EXCISION REPAIR PROTEIN RAD23 PANTHER PTHR10621: UV EXCISION REPAIR PROTEIN RAD23 SMART SM00213: Ubiquitin homologues SMART SM00165: Ubiquitin associated domain SMART SM00727: Heat shock chaperonin-binding motif. TIGRFAMs TIGR00601: rad23: UV excision repair protein Rad23 |
| Pac2p | SUPERFAMILY SSF54236: Ubiquitin-like |
PANTHER PTHR15140:SF6: SUBFAMILY NOT NAMED PANTHER PTHR15140: TUBULIN-SPECIFIC CHAPERONE E Pfam PF01302: CAP_GLY Pfam PF13516: LRR_6 Pfam PF00560: LRR_1 SUPERFAMILY SSF52047: RNI-like SUPERFAMILY SSF74924: Cap-Gly domain SMART SM01052: no description Gene3D G3DSA:2.30.30.190: no description Gene3D G3DSA:3.80.10.10: no description |
| Ubp6p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
PANTHER PTHR24006:SF121: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE PANTHER PTHR24006: FAMILY NOT NAMED SUPERFAMILY SSF54001: Cysteine proteinases Pfam PF00443: UCH SMART SM00213: Ubiquitin homologues |
| Rpl40ap | Pfam PF00240: ubiquitin SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
PRINTS PR00348: UBIQUITIN PANTHER PTHR10666: UBIQUITIN Pfam PF01020: Ribosomal_L40e SMART SM00213: Ubiquitin homologues |
| Ubx6p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
Pfam PF00789: UBX SMART SM00166: Domain present in ubiquitin-regulatory prote PANTHER PTHR13020:SF12: UBX DOMAIN-CONTAINING PROTEIN 6 PANTHER PTHR13020: UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAINING |
| Rpl40bp | Pfam PF00240: ubiquitin Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
PRINTS PR00348: UBIQUITIN Pfam PF01020: Ribosomal_L40e SMART SM00213: Ubiquitin homologues PANTHER PTHR10666: UBIQUITIN |
| Ubi4p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like Pfam PF00240: ubiquitin |
SMART SM00213: Ubiquitin homologues PRINTS PR00348: UBIQUITIN PANTHER PTHR10666: UBIQUITIN |
| Rps31p | Pfam PF00240: ubiquitin Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
Pfam PF01599: Ribosomal_S27 PRINTS PR00348: UBIQUITIN SMART SM00213: Ubiquitin homologues PANTHER PTHR10666: UBIQUITIN |
| Ste11p | Gene3D G3DSA:3.10.20.90: no description |
SUPERFAMILY SSF56112: Protein kinase-like (PK-like) SUPERFAMILY SSF47769: SAM/Pointed domain Pfam PF00069: Pkinase Pfam PF07647: SAM_2 PANTHER PTHR24361:SF140: SERINE/THREONINE-PROTEIN KINASE STE11 PANTHER PTHR24361: MITOGEN-ACTIVATED KINASE KINASE KINASE Gene3D G3DSA:1.10.150.50: no description Gene3D G3DSA:3.30.200.20: no description Gene3D G3DSA:1.10.510.10: no description SMART SM00454: Sterile alpha motif. SMART SM00220: Serine/Threonine protein kinases, catalytic SMART SM00219: Tyrosine kinase, catalytic domain |
| Ubx2p | Gene3D G3DSA:3.10.20.90: no description |
Pfam PF00789: UBX SUPERFAMILY SSF46934: UBA-like PANTHER PTHR23322:SF14: UBX DOMAIN CONTAINING PROTEIN (FRAGMENT) PANTHER PTHR23322: FAS-ASSOCIATED PROTEIN Gene3D G3DSA:1.10.8.10: no description SMART SM00166: Domain present in ubiquitin-regulatory prote |
| Ubx4p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like |
Pfam PF11470: TUG Pfam PF00789: UBX SMART SM00166: Domain present in ubiquitin-regulatory prote PANTHER PTHR23153:SF18: UBX DOMAIN PROTEIN PANTHER PTHR23153: UBX-RELATED |
| Dsk2p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like Pfam PF00240: ubiquitin |
Gene3D G3DSA:1.10.8.10: no description SMART SM00213: Ubiquitin homologues SMART SM00727: Heat shock chaperonin-binding motif. SMART SM00165: Ubiquitin associated domain SUPERFAMILY SSF46934: UBA-like Pfam PF00627: UBA PANTHER PTHR10677: UBIQUILIN |
| Alf1p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description |
PANTHER PTHR18916:SF6: TUBULIN-SPECIFIC CHAPERONE B (TUBULIN FOLDING COFACTOR B) PANTHER PTHR18916: DYNACTIN 1-RELATED MICROTUBULE-BINDING SUPERFAMILY SSF74924: Cap-Gly domain Gene3D G3DSA:2.30.30.190: no description Pfam PF01302: CAP_GLY SMART SM01052: no description |
| Hub1p | SUPERFAMILY SSF54236: Ubiquitin-like Gene3D G3DSA:3.10.20.90: no description Pfam PF00240: ubiquitin |
PANTHER PTHR13042:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13042: FAMILY NOT NAMED |
| Mdy2p | Gene3D G3DSA:3.10.20.90: no description SUPERFAMILY SSF54236: Ubiquitin-like Pfam PF00240: ubiquitin |
PANTHER PTHR10621: UV EXCISION REPAIR PROTEIN RAD23 SMART SM00213: Ubiquitin homologues |
This table lists domains/motifs that are unique to Usa1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Usa1p domain/motif information see the external links section.
Last updated on 2013-05-06
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
| Predicted Transmembane Domain(s) (Click on image for expanded interactive view) | Amino Acid Coordinate(s) |
|---|---|
| 537 - 559 | |
| 564 - 583 |
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Usa1p .
