SPT5/YML010W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Spt5p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Spt5p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Spt5p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Spt5p
Protein	Motifs in common with Spt5p	Other motifs in this protein (but not in Spt5p )
Rpl21ap	SUPERFAMILY SSF50104: Translation proteins SH3-like domain	PANTHER PTHR20981:SF0: SUBFAMILY NOT NAMED PANTHER PTHR20981: 60S RIBOSOMAL PROTEIN L21 Gene3D G3DSA:2.30.30.70: no description Pfam PF01157: Ribosomal_L21e
Img1p	SUPERFAMILY SSF50104: Translation proteins SH3-like domain	Pfam PF01245: Ribosomal_L19 PANTHER PTHR15680:SF4: SUBFAMILY NOT NAMED PANTHER PTHR15680: RIBOSOMAL PROTEIN L19
Hyp2p	Pfam PF00467: KOW SUPERFAMILY SSF50104: Translation proteins SH3-like domain	Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:2.40.50.140: no description TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A Pfam PF01287: eIF-5a PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF003025: Translation initiation factor eIF-5A
Rml2p	SUPERFAMILY SSF50104: Translation proteins SH3-like domain	Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 PANTHER PTHR13691:SF5: 50S RIBOSOMAL PROTEIN L2 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 TIGRFAMs TIGR01171: rplB_bact: ribosomal protein L2 SUPERFAMILY SSF50249: Nucleic acid-binding proteins
Rpl2ap	SUPERFAMILY SSF50104: Translation proteins SH3-like domain	PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types
Rpl26bp	Pfam PF00467: KOW SUPERFAMILY SSF50104: Translation proteins SH3-like domain	TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER
Rpl14bp	Pfam PF00467: KOW	Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11127:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11127: 60S RIBOSOMAL PROTEIN L14 Pfam PF01929: Ribosomal_L14e
Rps4bp	Pfam PF00467: KOW	PANTHER PTHR11581:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11581: 30S/40S RIBOSOMAL PROTEIN S4 PIR superfamily PIRSF002116: Ribosomal protein S4a/S4e ProDom PD002667: RS4_YEAST_P05753; Pfam PF00900: Ribosomal_S4e Pfam PF08071: RS4NT Pfam PF01479: S4 SMART SM00363: S4 RNA-binding domain
Rpl2bp	SUPERFAMILY SSF50104: Translation proteins SH3-like domain	PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50249: Nucleic acid-binding proteins PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description
Anb1p	SUPERFAMILY SSF50104: Translation proteins SH3-like domain Pfam PF00467: KOW	TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A PIR superfamily PIRSF003025: Translation initiation factor eIF-5A PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins Pfam PF01287: eIF-5a
Rps4ap	Pfam PF00467: KOW	PIR superfamily PIRSF002116: Ribosomal protein S4a/S4e Pfam PF00900: Ribosomal_S4e Pfam PF08071: RS4NT Pfam PF01479: S4 PANTHER PTHR11581:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11581: 30S/40S RIBOSOMAL PROTEIN S4 ProDom PD002667: RS4_YEAST_P05753; SMART SM00363: S4 RNA-binding domain
Rpl14ap	Pfam PF00467: KOW	Pfam PF01929: Ribosomal_L14e Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11127:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11127: 60S RIBOSOMAL PROTEIN L14
Rpl26ap	Pfam PF00467: KOW SUPERFAMILY SSF50104: Translation proteins SH3-like domain	TIGRFAMs TIGR01080: rplX_A_E: ribosomal protein L24 Gene3D G3DSA:2.30.30.30: no description PANTHER PTHR11143: 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER
Rpl21bp	SUPERFAMILY SSF50104: Translation proteins SH3-like domain	Gene3D G3DSA:2.30.30.70: no description Pfam PF01157: Ribosomal_L21e PANTHER PTHR20981:SF0: SUBFAMILY NOT NAMED PANTHER PTHR20981: 60S RIBOSOMAL PROTEIN L21
Mrpl40p	SMART SM00739: KOW (Kyprides, Ouzounis, Woese) motif.	Gene3D G3DSA:2.30.30.30: no description

Unique domains/motifs

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This table lists domains/motifs that are unique to Spt5p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Spt5p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Spt5p
Database source	Accession number	Description
PIR superfamily	PIRSF036945	Transcription elongation factor Spt5
PANTHER	PTHR11125	SUPPRESSOR OF TY 5
PANTHER	PTHR11125:SF7	SUBFAMILY NOT NAMED
Pfam	PF03439	Spt5-NGN
Pfam	PF11942	Spt5_N
SMART	SM00738	In Spt5p, this domain may confer affinity fo
SMART	SM01104	Spt5 C-terminal nonapeptide repeat binding S

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Spt5p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Spt5p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Spt5p .