HMG2/YLR450W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Hmg2p domain/motif information see the external links section.

Proteome Browser

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Hmg2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hmg2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Hmg2p
Protein	Motifs in common with Hmg2p	Other motifs in this protein (but not in Hmg2p )
Hmg1p	SUPERFAMILY SSF56542: Substrate-binding domain of HMG-CoA reductase SUPERFAMILY SSF55035: NAD-binding domain of HMG-CoA reductase Pfam PF00368: HMG-CoA_red Pfam PF13323: HPIH Pfam PF12349: Sterol-sensing PANTHER PTHR10572: 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE PRINTS PR00071: HMGCOARDTASE TIGRFAMs TIGR00533: HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductas Gene3D G3DSA:1.10.3270.10: no description Gene3D G3DSA:3.90.770.10: no description Gene3D G3DSA:3.30.70.420: no description	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Hmg2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hmg2p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Hmg2p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	21 - 43
	189 - 208
	217 - 236
	246 - 264
	328 - 350
	401 - 423
	498 - 520

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	1 - 39

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Hmg2p .