VPS33/YLR396C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Vps33p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Vps33p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Vps33p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Vps33p
Protein	Motifs in common with Vps33p	Other motifs in this protein (but not in Vps33p )
Sec1p	PANTHER PTHR11679: VESICLE PROTEIN SORTING-ASSOCIATED SUPERFAMILY SSF56815: Sec1/munc18-like (SM) proteins Gene3D G3DSA:3.40.50.1910: no description Gene3D G3DSA:3.90.830.10: no description Pfam PF00995: Sec1	PANTHER PTHR11679:SF4: GB DEF: PROTEIN TRANSPORT PROTEIN SEC1 Gene3D G3DSA:3.40.50.2060: no description Gene3D G3DSA:1.25.40.60: no description
Sly1p	SUPERFAMILY SSF56815: Sec1/munc18-like (SM) proteins Gene3D G3DSA:3.40.50.1910: no description Gene3D G3DSA:3.90.830.10: no description PANTHER PTHR11679: VESICLE PROTEIN SORTING-ASSOCIATED Pfam PF00995: Sec1	Gene3D G3DSA:3.40.50.2060: no description Gene3D G3DSA:1.25.40.60: no description PANTHER PTHR11679:SF2: SLY1-RELATED
Vps45p	Gene3D G3DSA:3.40.50.1910: no description Gene3D G3DSA:3.90.830.10: no description SUPERFAMILY SSF56815: Sec1/munc18-like (SM) proteins PANTHER PTHR11679: VESICLE PROTEIN SORTING-ASSOCIATED Pfam PF00995: Sec1	Gene3D G3DSA:3.40.50.2060: no description Gene3D G3DSA:1.25.40.60: no description PANTHER PTHR11679:SF3: VACUOLAR PROTEIN SORTING-ASSOCIATED

Unique domains/motifs

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This table lists domains/motifs that are unique to Vps33p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Vps33p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Vps33p
Database source	Accession number	Description
PANTHER	PTHR11679:SF1	VACUOLAR PROTEIN SORTING (VPS33)

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Vps33p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Vps33p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Vps33p .