RPP0/YLR340W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpp0p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpp0p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpp0p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpp0p
Protein	Motifs in common with Rpp0p	Other motifs in this protein (but not in Rpp0p )
Rpp1ap	PANTHER PTHR21141: 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER Pfam PF00428: Ribosomal_60s	none
Rpp1bp	PANTHER PTHR21141: 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER Pfam PF00428: Ribosomal_60s	none
Mrpl11p	Pfam PF00466: Ribosomal_L10	ProDom PD968187: Q30KS2_CANFA_Q30KS2;
Rpp2bp	PANTHER PTHR21141: 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER Pfam PF00428: Ribosomal_60s	none
Mrt4p	Pfam PF00466: Ribosomal_L10 PANTHER PTHR21141: 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	none
Rpp2ap	Pfam PF00428: Ribosomal_60s PANTHER PTHR21141: 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpp0p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpp0p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rpp0p
Database source	Accession number	Description
PANTHER	PTHR21141:SF3	60S ACIDIC RIBOSOMAL PROTEIN P0

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpp0p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpp0p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rpp0p .