RPS25B/YLR333C Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rps25bp domain/motif information see the external links section.


Click on image for expanded interactive view
pbrowse

Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Rps25bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rps25bp domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Rps25bp
Protein Motifs in common with Rps25bp Other motifs in this protein (but not in Rps25bp )
Rps25ap PANTHER PTHR12850:SF3: SUBFAMILY NOT NAMED
PANTHER PTHR12850: FAMILY NOT NAMED
Pfam PF03297: Ribosomal_S25
ProDom PD012268: RS25A_YEAST_Q3E792;
none

Unique domains/motifs


This table lists domains/motifs that are unique to Rps25bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rps25bp domain/motif information see the external links section.

Last updated on 2013-12-16

There are no unique domains/motifs predicted for Rps25bp .

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rps25bp .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rps25bp .


The following external links can be used to directly search external databases for domain/motif information for Rps25bp .