IMH1/YLR309C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Imh1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Imh1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Imh1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Imh1p
Protein	Motifs in common with Imh1p	Other motifs in this protein (but not in Imh1p )
Zip1p	SUPERFAMILY SSF46579: Prefoldin	none
Spc110p	SUPERFAMILY SSF46579: Prefoldin PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	PANTHER PTHR18937:SF67: PROTEIN NUF1
Gim4p	SUPERFAMILY SSF46579: Prefoldin	Pfam PF01920: Prefoldin_2 PANTHER PTHR13303: PREFOLDIN SUBUNIT 2 Gene3D G3DSA:1.10.287.370: no description
Smc1p	PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Gene3D G3DSA:3.40.50.300: no description Pfam PF02463: SMC_N Pfam PF06470: SMC_hinge SMART SM00968: SMC proteins Flexible Hinge Domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF75553: Smc hinge domain PANTHER PTHR18937:SF12: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC1
Bud27p	SUPERFAMILY SSF46579: Prefoldin	Gene3D G3DSA:1.10.287.370: no description Pfam PF02996: Prefoldin Pfam PF12927: DUF3835
Smc2p	PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Pfam PF02463: SMC_N Pfam PF06470: SMC_hinge PANTHER PTHR18937:SF9: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF75553: Smc hinge domain Gene3D G3DSA:3.40.50.300: no description SMART SM00968: SMC proteins Flexible Hinge Domain
Pac10p	SUPERFAMILY SSF46579: Prefoldin	PIR superfamily PIRSF016396: Prefoldin, subunit 3 Gene3D G3DSA:1.10.287.370: no description PANTHER PTHR12409: PREFOLDIN SUBUNIT 3 Pfam PF02996: Prefoldin
Myo1p	SUPERFAMILY SSF46579: Prefoldin	Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:4.10.270.10: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PRINTS PR00193: MYOSINHEAVY Pfam PF00063: Myosin_head PANTHER PTHR13140:SF23: MYOSIN HEAVY CHAIN, NONMUSCLE OR SMOOTH MUSCLE PANTHER PTHR13140: MYOSIN ProDom PD936484: Q806D4_9VIRU_Q806D4; SMART SM00242: Myosin. Large ATPases.
Tid3p	SUPERFAMILY SSF46579: Prefoldin	Pfam PF03801: Ndc80_HEC PANTHER PTHR10643:SF0: KINETOCHORE PROTEIN NDC80 PANTHER PTHR10643: KINETOCHORE PROTEIN NDC80
Smc3p	PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF75553: Smc hinge domain PANTHER PTHR18937:SF8: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC3 Pfam PF02463: SMC_N Pfam PF06470: SMC_hinge SMART SM00968: SMC proteins Flexible Hinge Domain Gene3D G3DSA:3.40.50.300: no description
Pfd1p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR20903: PREFOLDIN SUBUNIT 1-RELATED Pfam PF01920: Prefoldin_2 Gene3D G3DSA:1.10.287.370: no description
Mlp1p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR32483:SF1: SUBFAMILY NOT NAMED PANTHER PTHR32483: FAMILY NOT NAMED Pfam PF07926: TPR_MLP1_2 SUPERFAMILY SSF46966: Spectrin repeat
Smc4p	SUPERFAMILY SSF46579: Prefoldin PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	SMART SM00968: SMC proteins Flexible Hinge Domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF75553: Smc hinge domain Gene3D G3DSA:3.40.50.300: no description PANTHER PTHR18937:SF13: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC4 Pfam PF02463: SMC_N Pfam PF06470: SMC_hinge
Yke2p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR21431:SF0: SUBFAMILY NOT NAMED PANTHER PTHR21431: PREFOLDIN SUBUNIT 6 Pfam PF01920: Prefoldin_2 Gene3D G3DSA:1.10.287.370: no description
Gim5p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR12674:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12674: PREFOLDIN SUBUNIT 5 TIGRFAMs TIGR00293: TIGR00293: prefoldin, alpha subunit Pfam PF02996: Prefoldin Gene3D G3DSA:1.10.287.370: no description
Gim3p	SUPERFAMILY SSF46579: Prefoldin	Pfam PF01920: Prefoldin_2 PANTHER PTHR21100:SF7: GB DEF: PREFOLDIN SUBUNIT 4 PANTHER PTHR21100: FAMILY NOT NAMED PIR superfamily PIRSF016477: Prefoldin, subunit 4 Gene3D G3DSA:1.10.287.370: no description
Rad50p	SUPERFAMILY SSF46579: Prefoldin	PANTHER PTHR18867:SF11: RAD50 PANTHER PTHR18867: RAD50 Gene3D G3DSA:3.40.50.300: no description TIGRFAMs TIGR00606: rad50: rad50 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF13476: AAA_23 Pfam PF04423: Rad50_zn_hook Pfam PF13558: SbcCD_C
Slk19p	SUPERFAMILY SSF46579: Prefoldin	Pfam PF12709: Kinetocho_Slk19

Unique domains/motifs

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This table lists domains/motifs that are unique to Imh1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Imh1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Imh1p
Database source	Accession number	Description
PANTHER	PTHR18937:SF69	SUBFAMILY NOT NAMED
Pfam	PF01465	GRIP
SMART	SM00755	golgin-97, RanBP2alpha,Imh1p and p230/golgin

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Imh1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Imh1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Imh1p .