CBF5/YLR175W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Cbf5p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Cbf5p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Cbf5p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Cbf5p
Protein	Motifs in common with Cbf5p	Other motifs in this protein (but not in Cbf5p )
Pim1p	SUPERFAMILY SSF88697: PUA domain-like	SMART SM00464: Found in ATP-dependent protease La (LON) SMART SM00382: ATPases associated with a variety of cellula TIGRFAMs TIGR00763: lon: ATP-dependent protease La SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like PRINTS PR00830: ENDOLAPTASE Pfam PF05362: Lon_C Pfam PF02190: LON Pfam PF00004: AAA Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR10046:SF23: LON PROTEASE HOMOLOG, MITOCHONDRIAL PANTHER PTHR10046: ATP DEPENDENT LON PROTEASE FAMILY MEMBER
Pus9p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR10436:SF40: RNA PSEUDOURIDYLATE SYNTHASE PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN TIGRFAMs TIGR00005: rluA_subfam: pseudouridine synthase, RluA family Pfam PF00849: PseudoU_synth_2
Tma64p	Gene3D G3DSA:2.30.130.10: no description SUPERFAMILY SSF88697: PUA domain-like	Gene3D G3DSA:1.10.245.10: no description PANTHER PTHR12217:SF3: GB DEF: HYPOTHETICAL PROTEIN PANTHER PTHR12217: LIGATIN Pfam PF01253: SUI1 Pfam PF02201: SWIB SUPERFAMILY SSF55159: eIF1-like SUPERFAMILY SSF47592: SWIB/MDM2 domain
Pro1p	Gene3D G3DSA:2.30.130.10: no description SMART SM00359: Putative RNA-binding Domain in PseudoUridine SUPERFAMILY SSF88697: PUA domain-like Pfam PF01472: PUA	Gene3D G3DSA:3.40.1160.10: no description SUPERFAMILY SSF53633: Carbamate kinase-like TIGRFAMs TIGR01027: proB: glutamate 5-kinase PIR superfamily PIRSF000729: Glutamate 5-kinase Pfam PF00696: AA_kinase PANTHER PTHR11063:SF6: SUBFAMILY NOT NAMED PANTHER PTHR11063: GLUTAMATE SEMIALDEHYDE DEHYDROGENASE PRINTS PR00474: GLU5KINASE
Tma20p	SMART SM00359: Putative RNA-binding Domain in PseudoUridine SUPERFAMILY SSF88697: PUA domain-like Gene3D G3DSA:2.30.130.10: no description Pfam PF01472: PUA TIGRFAMs TIGR00451: unchar_dom_2: uncharacterized domain 2	PIR superfamily PIRSF005067: Predicted translation machinery-associated RNA binding protein PANTHER PTHR22798: MCT-1 PROTEIN
Deg1p	SUPERFAMILY SSF55120: Pseudouridine synthase	Pfam PF01416: PseudoU_synth_1 PANTHER PTHR11142: PSEUDOURIDYLATE SYNTHASE TIGRFAMs TIGR00071: hisT_truA: tRNA pseudouridine(38-40) synthase Gene3D G3DSA:3.30.70.580: no description Gene3D G3DSA:3.30.70.660: no description
Pus2p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR11142: PSEUDOURIDYLATE SYNTHASE Gene3D G3DSA:3.30.70.580: no description Gene3D G3DSA:3.30.70.660: no description Pfam PF01416: PseudoU_synth_1 TIGRFAMs TIGR00071: hisT_truA: tRNA pseudouridine(38-40) synthase
Pus6p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR10436:SF40: RNA PSEUDOURIDYLATE SYNTHASE PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN Pfam PF00849: PseudoU_synth_2
Yhr033wp	Pfam PF01472: PUA SUPERFAMILY SSF88697: PUA domain-like SMART SM00359: Putative RNA-binding Domain in PseudoUridine Gene3D G3DSA:2.30.130.10: no description	PANTHER PTHR11063:SF6: SUBFAMILY NOT NAMED PANTHER PTHR11063: GLUTAMATE SEMIALDEHYDE DEHYDROGENASE Pfam PF00696: AA_kinase PRINTS PR00474: GLU5KINASE TIGRFAMs TIGR01027: proB: glutamate 5-kinase SUPERFAMILY SSF53633: Carbamate kinase-like Gene3D G3DSA:3.40.1160.10: no description PIR superfamily PIRSF000729: Glutamate 5-kinase
Met3p	SUPERFAMILY SSF88697: PUA domain-like	SUPERFAMILY SSF52374: Nucleotidylyl transferase SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases TIGRFAMs TIGR00339: sopT: sulfate adenylyltransferase PANTHER PTHR11055:SF2: SULFATE ADENYLYLTRANSFERASE PANTHER PTHR11055: ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERASE Gene3D G3DSA:3.10.400.10: no description Gene3D G3DSA:3.40.50.620: no description Gene3D G3DSA:3.40.50.300: no description Pfam PF01747: ATP-sulfurylase Pfam PF14306: PUA_2
Pus5p	SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR10436:SF49: SUBFAMILY NOT NAMED PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN Pfam PF00849: PseudoU_synth_2
Pus4p	Pfam PF01509: TruB_N SUPERFAMILY SSF55120: Pseudouridine synthase	PANTHER PTHR13767:SF2: TRNA PSEUDOURIDINE SYNTHASE B PANTHER PTHR13767: TRNA-PSEUDOURIDINE SYNTHASE
Rib2p	SUPERFAMILY SSF55120: Pseudouridine synthase	TIGRFAMs TIGR00005: rluA_subfam: pseudouridine synthase, RluA family Gene3D G3DSA:3.40.140.10: no description SUPERFAMILY SSF53927: Cytidine deaminase-like PANTHER PTHR10436:SF40: RNA PSEUDOURIDYLATE SYNTHASE PANTHER PTHR10436: RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN Pfam PF00849: PseudoU_synth_2 Pfam PF00383: dCMP_cyt_deam_1
Pus7p	SUPERFAMILY SSF55120: Pseudouridine synthase	Pfam PF01142: TruD PIR superfamily PIRSF037016: Predicted pseudouridine synthase, eukaryotic type TIGRFAMs TIGR00094: tRNA_TruD_broad: tRNA pseudouridine synthase, TruD PANTHER PTHR13326: TRNA PSEUDOURIDINE SYNTHASE D
Nip7p	Gene3D G3DSA:2.30.130.10: no description SUPERFAMILY SSF88697: PUA domain-like SMART SM00359: Putative RNA-binding Domain in PseudoUridine	PIR superfamily PIRSF017190: 60S ribosome subunit biogenesis protein NIP7 PANTHER PTHR23415:SF4: 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 PANTHER PTHR23415: CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 SUPERFAMILY SSF88802: Pre-PUA domain Pfam PF03657: UPF0113
Pus1p	SUPERFAMILY SSF55120: Pseudouridine synthase	Gene3D G3DSA:3.30.70.580: no description Gene3D G3DSA:3.30.70.660: no description TIGRFAMs TIGR00071: hisT_truA: tRNA pseudouridine(38-40) synthase Pfam PF01416: PseudoU_synth_1 PANTHER PTHR11142: PSEUDOURIDYLATE SYNTHASE

Unique domains/motifs

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This table lists domains/motifs that are unique to Cbf5p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Cbf5p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Cbf5p
Database source	Accession number	Description
PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5
Pfam	PF08068	DKCLD
TIGRFAMs	TIGR00425	CBF5: putative rRNA pseudouridine synthase

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Cbf5p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Cbf5p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Cbf5p .