SEN2/YLR105C Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Sen2p domain/motif information see the external links section.

Proteome Browser
Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


Click on image for expanded interactive view
pbrowse

Shared domains/motifs
Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)


This table lists proteins that share domains/motifs in common with those found in Sen2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Sen2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Sen2p
Protein Motifs in common with Sen2p Other motifs in this protein (but not in Sen2p )
Sen34p TIGRFAMs TIGR00324: endA: tRNA-intron endonuclease
Pfam PF01974: tRNA_int_endo
SUPERFAMILY SSF53032: tRNA-intron endonuclease catalytic domain-like
Gene3D G3DSA:3.40.1350.10: no description
 PIR superfamily PIRSF017250: tRNA-splicing endonuclease, SEN34 subunit
PANTHER PTHR13070: TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED

Unique domains/motifs
Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)


This table lists domains/motifs that are unique to Sen2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Sen2p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Sen2p
Database source Accession number Description
PIR superfamily PIRSF011789 tRNA-splicing endonuclease, SEN2 subunit
PANTHER PTHR21227 TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
PANTHER PTHR21227:SF0 SUBFAMILY NOT NAMED

Transmembrane Domains
Jump to: top | Shared domains | Unique domains | Signal peptide(s)


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Sen2p .

Signal Peptide(s)
Jump to: top | Shared domains | Unique domains | Transmembrane domains


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Sen2p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Sen2p .