RLP24/YLR009W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rlp24p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rlp24p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rlp24p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rlp24p
Protein	Motifs in common with Rlp24p	Other motifs in this protein (but not in Rlp24p )
Srd1p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Pfam PF00320: GATA SMART SM00401: zinc finger binding to DNA consensus sequenc Gene3D G3DSA:3.30.50.10: no description
Lrg1p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	SUPERFAMILY SSF48350: GTPase activation domain, GAP PANTHER PTHR24215:SF10: CG11203-PA, ISOFORM A PANTHER PTHR24215: FAMILY NOT NAMED Pfam PF00412: LIM Pfam PF00620: RhoGAP SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1 SMART SM00324: GTPase-activator protein for Rho-like GTPase Gene3D G3DSA:2.10.110.10: no description Gene3D G3DSA:1.10.555.10: no description
Rga2p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	SUPERFAMILY SSF48350: GTPase activation domain, GAP Pfam PF00620: RhoGAP Pfam PF00412: LIM Gene3D G3DSA:2.10.110.10: no description Gene3D G3DSA:1.10.555.10: no description PANTHER PTHR23178: CHIMERIN-RELATED RHO- GTPASE-ACTIVATING PROTEIN SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1 SMART SM00324: GTPase-activator protein for Rho-like GTPase
Gln3p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	PANTHER PTHR10071:SF55: NITROGEN REGULATORY PROTEIN GLN3 PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) Gene3D G3DSA:3.30.50.10: no description Pfam PF00320: GATA SMART SM00401: zinc finger binding to DNA consensus sequenc PRINTS PR00619: GATAZNFINGER
Gat1p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Pfam PF00320: GATA Pfam PF08550: DUF1752 Gene3D G3DSA:3.30.50.10: no description PRINTS PR00619: GATAZNFINGER SMART SM00401: zinc finger binding to DNA consensus sequenc PANTHER PTHR10071:SF62: TRANSCRIPTIONAL REGULATORY PROTEIN GAT1 PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Rpl24ap	PANTHER PTHR10792: 60S RIBOSOMAL PROTEIN L24 Gene3D G3DSA:2.30.170.20: no description Pfam PF01246: Ribosomal_L24e SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	none
Rpl24bp	Pfam PF01246: Ribosomal_L24e PANTHER PTHR10792: 60S RIBOSOMAL PROTEIN L24 SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain) Gene3D G3DSA:2.30.170.20: no description	none
Gat4p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	SMART SM00401: zinc finger binding to DNA consensus sequenc Gene3D G3DSA:3.30.50.10: no description Pfam PF00320: GATA
Gzf3p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Pfam PF00320: GATA Gene3D G3DSA:3.30.50.10: no description PRINTS PR00619: GATAZNFINGER SMART SM00401: zinc finger binding to DNA consensus sequenc PANTHER PTHR10071:SF56: PROTEIN GZF3 PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Ash1p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Gene3D G3DSA:3.30.50.10: no description SMART SM00401: zinc finger binding to DNA consensus sequenc Pfam PF00320: GATA
Dal80p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Pfam PF00320: GATA SMART SM00401: zinc finger binding to DNA consensus sequenc PANTHER PTHR10071:SF57: NITROGEN REGULATORY PROTEIN DAL80 PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) Gene3D G3DSA:3.30.50.10: no description PRINTS PR00619: GATAZNFINGER
Pxl1p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1 Pfam PF00412: LIM Gene3D G3DSA:2.10.110.10: no description
Gat3p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	SMART SM00401: zinc finger binding to DNA consensus sequenc Gene3D G3DSA:3.30.50.10: no description Pfam PF00320: GATA
Gat2p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Gene3D G3DSA:3.30.50.10: no description Pfam PF00320: GATA SMART SM00401: zinc finger binding to DNA consensus sequenc PANTHER PTHR10071:SF112: GATA-FACTOR-RELATED PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Rga1p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1 SMART SM00324: GTPase-activator protein for Rho-like GTPase SUPERFAMILY SSF48350: GTPase activation domain, GAP PANTHER PTHR23178: CHIMERIN-RELATED RHO- GTPASE-ACTIVATING PROTEIN Gene3D G3DSA:2.10.110.10: no description Gene3D G3DSA:1.10.555.10: no description Pfam PF00620: RhoGAP Pfam PF00412: LIM
Ecm23p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Gene3D G3DSA:3.30.50.10: no description SMART SM00401: zinc finger binding to DNA consensus sequenc Pfam PF00320: GATA
Mrp2p	SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)	Gene3D G3DSA:4.10.830.10: no description Pfam PF00253: Ribosomal_S14 PANTHER PTHR19836:SF3: MITOCHONDRIAL 40S RIBOSOMAL PROTEIN MRP2 PANTHER PTHR19836: 30S RIBOSOMAL PROTEIN S14

Unique domains/motifs

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This table lists domains/motifs that are unique to Rlp24p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rlp24p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rlp24p
Database source	Accession number	Description
PANTHER	PTHR10792:SF2	RIBOSOME BIOGENESIS PROTEIN RLP24
SMART	SM00746	metallochaperone-like domain

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rlp24p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rlp24p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rlp24p .