RLP24/YLR009W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rlp24p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Rlp24p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rlp24p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Rlp24p
Protein Motifs in common with Rlp24p Other motifs in this protein (but not in Rlp24p )
Srd1p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Pfam PF00320: GATA
SMART SM00401: zinc finger binding to DNA consensus sequenc
Gene3D G3DSA:3.30.50.10: no description
Lrg1p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
SUPERFAMILY SSF48350: GTPase activation domain, GAP
Gene3D G3DSA:2.10.110.10: no description
Gene3D G3DSA:1.10.555.10: no description
PANTHER PTHR24215:SF10: CG11203-PA, ISOFORM A
PANTHER PTHR24215: FAMILY NOT NAMED
Pfam PF00412: LIM
Pfam PF00620: RhoGAP
SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1
SMART SM00324: GTPase-activator protein for Rho-like GTPase
Rga2p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1
SMART SM00324: GTPase-activator protein for Rho-like GTPase
SUPERFAMILY SSF48350: GTPase activation domain, GAP
Gene3D G3DSA:2.10.110.10: no description
Gene3D G3DSA:1.10.555.10: no description
PANTHER PTHR23178: CHIMERIN-RELATED RHO- GTPASE-ACTIVATING PROTEIN
Pfam PF00620: RhoGAP
Pfam PF00412: LIM
Gln3p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
PRINTS PR00619: GATAZNFINGER
Pfam PF00320: GATA
SMART SM00401: zinc finger binding to DNA consensus sequenc
PANTHER PTHR10071:SF55: NITROGEN REGULATORY PROTEIN GLN3
PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Gene3D G3DSA:3.30.50.10: no description
Gat1p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
PANTHER PTHR10071:SF62: TRANSCRIPTIONAL REGULATORY PROTEIN GAT1
PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Gene3D G3DSA:3.30.50.10: no description
Pfam PF00320: GATA
Pfam PF08550: DUF1752
PRINTS PR00619: GATAZNFINGER
SMART SM00401: zinc finger binding to DNA consensus sequenc
Rpl24ap SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Gene3D G3DSA:2.30.170.20: no description
PANTHER PTHR10792: 60S RIBOSOMAL PROTEIN L24
Pfam PF01246: Ribosomal_L24e
none
Rpl24bp PANTHER PTHR10792: 60S RIBOSOMAL PROTEIN L24
Pfam PF01246: Ribosomal_L24e
SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Gene3D G3DSA:2.30.170.20: no description
none
Gat4p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Gene3D G3DSA:3.30.50.10: no description
SMART SM00401: zinc finger binding to DNA consensus sequenc
Pfam PF00320: GATA
Gzf3p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Pfam PF00320: GATA
SMART SM00401: zinc finger binding to DNA consensus sequenc
PRINTS PR00619: GATAZNFINGER
Gene3D G3DSA:3.30.50.10: no description
PANTHER PTHR10071:SF56: PROTEIN GZF3
PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Ash1p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Gene3D G3DSA:3.30.50.10: no description
Pfam PF00320: GATA
SMART SM00401: zinc finger binding to DNA consensus sequenc
Dal80p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
SMART SM00401: zinc finger binding to DNA consensus sequenc
PANTHER PTHR10071:SF57: NITROGEN REGULATORY PROTEIN DAL80
PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
PRINTS PR00619: GATAZNFINGER
Gene3D G3DSA:3.30.50.10: no description
Pfam PF00320: GATA
Pxl1p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1
Pfam PF00412: LIM
Gene3D G3DSA:2.10.110.10: no description
Gat3p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Pfam PF00320: GATA
SMART SM00401: zinc finger binding to DNA consensus sequenc
Gene3D G3DSA:3.30.50.10: no description
Gat2p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
SMART SM00401: zinc finger binding to DNA consensus sequenc
Gene3D G3DSA:3.30.50.10: no description
PANTHER PTHR10071:SF112: GATA-FACTOR-RELATED
PANTHER PTHR10071: TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
Pfam PF00320: GATA
Rga1p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Pfam PF00620: RhoGAP
Pfam PF00412: LIM
PANTHER PTHR23178: CHIMERIN-RELATED RHO- GTPASE-ACTIVATING PROTEIN
Gene3D G3DSA:2.10.110.10: no description
Gene3D G3DSA:1.10.555.10: no description
SMART SM00132: Zinc-binding domain present in Lin-11, Isl-1
SMART SM00324: GTPase-activator protein for Rho-like GTPase
SUPERFAMILY SSF48350: GTPase activation domain, GAP
Ecm23p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
Gene3D G3DSA:3.30.50.10: no description
Pfam PF00320: GATA
SMART SM00401: zinc finger binding to DNA consensus sequenc
Mrp2p SUPERFAMILY SSF57716: Glucocorticoid receptor-like (DNA-binding domain)
PANTHER PTHR19836:SF3: MITOCHONDRIAL 40S RIBOSOMAL PROTEIN MRP2
PANTHER PTHR19836: 30S RIBOSOMAL PROTEIN S14
Gene3D G3DSA:4.10.830.10: no description
Pfam PF00253: Ribosomal_S14

Unique domains/motifs


This table lists domains/motifs that are unique to Rlp24p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rlp24p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Rlp24p
Database source Accession number Description
PANTHER PTHR10792:SF2 RIBOSOME BIOGENESIS PROTEIN RLP24
SMART SM00746 metallochaperone-like domain

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rlp24p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rlp24p .


The following external links can be used to directly search external databases for domain/motif information for Rlp24p .