SDH2/YLL041C Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Sdh2p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Sdh2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Sdh2p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Sdh2p
Protein Motifs in common with Sdh2p Other motifs in this protein (but not in Sdh2p )
Ola1p Gene3D G3DSA:3.10.20.30: no description
PANTHER PTHR23305:SF3: GTP-BINDING PROTEIN-RELATED
PANTHER PTHR23305: GTP-BINDING PROTEIN-RELATED
PIR superfamily PIRSF006641: Predicted GTP-dependent nucleic acid-binding protein, EngD type
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF81271: TGS-like
TIGRFAMs TIGR00092: TIGR00092: GTP-binding protein YchF
Gene3D G3DSA:3.40.50.300: no description
Gene3D G3DSA:1.10.150.300: no description
PRINTS PR00326: GTP1OBG
Pfam PF06071: YchF-GTPase_C
Pfam PF01926: MMR_HSR1
Glt1p SUPERFAMILY SSF46548: alpha-helical ferredoxin
Gene3D G3DSA:1.10.1060.10: no description
PIR superfamily PIRSF000187: Glutamate synthase (NADH/NADPH), eukaryotic type
PRINTS PR00419: ADXRDTASE
PANTHER PTHR11938:SF1: GLUTAMATE SYNTHASE
PANTHER PTHR11938: FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
TIGRFAMs TIGR01317: GOGAT_sm_gam: glutamate synthase, NADH/NADPH, smal
SUPERFAMILY SSF51395: FMN-linked oxidoreductases
SUPERFAMILY SSF56235: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SUPERFAMILY SSF69336: Alpha subunit of glutamate synthase, C-terminal domain
SUPERFAMILY SSF51971: Nucleotide-binding domain
Gene3D G3DSA:3.60.20.10: no description
Gene3D G3DSA:3.20.20.70: no description
Gene3D G3DSA:2.160.20.60: no description
Gene3D G3DSA:3.40.50.720: no description
Gene3D G3DSA:3.50.50.60: no description
Pfam PF01645: Glu_synthase
Pfam PF00310: GATase_2
Pfam PF04898: Glu_syn_central
Pfam PF01493: GXGXG
Pfam PF14691: Fer4_20
Pfam PF07992: Pyr_redox_2
Ylf2p Gene3D G3DSA:3.10.20.30: no description
Pfam PF06071: YchF-GTPase_C
Pfam PF01926: MMR_HSR1
TIGRFAMs TIGR00092: TIGR00092: GTP-binding protein YchF
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF81271: TGS-like
Gene3D G3DSA:3.40.50.300: no description
Gene3D G3DSA:1.10.150.300: no description
PANTHER PTHR23305:SF2: GTP-BINDING PROTEIN YLF2-RELATED
PANTHER PTHR23305: GTP-BINDING PROTEIN-RELATED
PRINTS PR00326: GTP1OBG
PIR superfamily PIRSF006641: Predicted GTP-dependent nucleic acid-binding protein, EngD type
Urm1p Gene3D G3DSA:3.10.20.30: no description
PANTHER PTHR14986:SF2: SUBFAMILY NOT NAMED
PANTHER PTHR14986: RURM1 PROTEIN
PIR superfamily PIRSF037379: Ubiquitin-related modifier 1
Pfam PF09138: Urm1
SUPERFAMILY SSF54285: MoaD/ThiS
Ths1p Gene3D G3DSA:3.10.20.30: no description
Pfam PF00587: tRNA-synt_2b
Pfam PF03129: HGTP_anticodon
Pfam PF02824: TGS
Pfam PF07973: tRNA_SAD
PANTHER PTHR11451:SF5: THREONYL-TRNA SYNTHETASE
PANTHER PTHR11451: TRNA SYNTHETASE-RELATED
SMART SM00863: Threonyl and Alanyl tRNA synthetase second a
Gene3D G3DSA:3.30.980.10: no description
Gene3D G3DSA:3.30.54.20: no description
Gene3D G3DSA:3.30.930.10: no description
Gene3D G3DSA:3.40.50.800: no description
PRINTS PR01047: TRNASYNTHTHR
SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases
SUPERFAMILY SSF55186: ThrRS/AlaRS common domain
SUPERFAMILY SSF52954: Class II aaRS ABD-related
SUPERFAMILY SSF81271: TGS-like
TIGRFAMs TIGR00418: thrS: threonine--tRNA ligase
Yah1p Gene3D G3DSA:3.10.20.30: no description
SUPERFAMILY SSF54292: 2Fe-2S ferredoxin-like
PRINTS PR00355: ADRENODOXIN
Pfam PF00111: Fer2
PANTHER PTHR23426:SF1: ADRENODOXIN
PANTHER PTHR23426: FERREDOXIN/ADRENODOXIN

Unique domains/motifs


This table lists domains/motifs that are unique to Sdh2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Sdh2p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Sdh2p
Database source Accession number Description
PANTHER PTHR11921 SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
Pfam PF13085 Fer2_3
Pfam PF13534 Fer4_17
TIGRFAMs TIGR00384 dhsB: succinate dehydrogenase and fumarate reducta

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Sdh2p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view) Amino Acid Coordinate(s)
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The following external links can be used to directly search external databases for domain/motif information for Sdh2p .