SOD1/YJR104C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Sod1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Sod1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Sod1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Sod1p
Protein	Motifs in common with Sod1p	Other motifs in this protein (but not in Sod1p )
Ccs1p	SUPERFAMILY SSF49329: Cu,Zn superoxide dismutase-like Pfam PF00080: Sod_Cu PANTHER PTHR10003: SUPEROXIDE DISMUTASE [CU-ZN]-RELATED Gene3D G3DSA:2.60.40.200: no description	SUPERFAMILY SSF55008: HMA, heavy metal-associated domain Pfam PF00403: HMA PANTHER PTHR10003:SF27: COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE Gene3D G3DSA:3.30.70.100: no description

Unique domains/motifs

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This table lists domains/motifs that are unique to Sod1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Sod1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Sod1p
Database source	Accession number	Description
PRINTS	PR00068	CUZNDISMTASE

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Sod1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Sod1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Sod1p .