RPL43B/YJR094W-A Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpl43bp domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpl43bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl43bp domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl43bp
Protein	Motifs in common with Rpl43bp	Other motifs in this protein (but not in Rpl43bp )
Rpl37bp	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins Gene3D G3DSA:2.20.25.30: no description	Pfam PF01907: Ribosomal_L37e PANTHER PTHR10768:SF0: 60S RIBOSOMAL PROTEIN L37 PANTHER PTHR10768: 60S RIBOSOMAL PROTEIN L37 ProDom PD005132: RL37B_YEAST_P51402;
Rps27bp	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins	PANTHER PTHR11594:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11594: 40S RIBOSOMAL PROTEIN S27 Gene3D G3DSA:2.20.25.100: no description Pfam PF01667: Ribosomal_S27e ProDom PD004466: Q75C52_ASHGO_Q75C52;
Rpl42bp	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins	Pfam PF00935: Ribosomal_L44 PANTHER PTHR10369: 60S RIBOSOMAL PROTEIN L36A/L44 ProDom PD002841: RL44_YEAST_P02405; Gene3D G3DSA:3.10.450.80: no description
Rps27ap	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins	PANTHER PTHR11594:SF0: SUBFAMILY NOT NAMED PANTHER PTHR11594: 40S RIBOSOMAL PROTEIN S27 Pfam PF01667: Ribosomal_S27e ProDom PD004466: RS27A_YEAST_P35997; Gene3D G3DSA:2.20.25.100: no description
Rpl37ap	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins Gene3D G3DSA:2.20.25.30: no description	Pfam PF01907: Ribosomal_L37e ProDom PD005132: RL37A_YEAST_P49166; PANTHER PTHR10768:SF0: 60S RIBOSOMAL PROTEIN L37 PANTHER PTHR10768: 60S RIBOSOMAL PROTEIN L37
Mrpl39p	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins	PANTHER PTHR15238:SF4: ADR188CP PANTHER PTHR15238: FAMILY NOT NAMED TIGRFAMs TIGR01023: rpmG_bact: ribosomal protein L33
Rpl42ap	SUPERFAMILY SSF57829: Zn-binding ribosomal proteins	Pfam PF00935: Ribosomal_L44 Gene3D G3DSA:3.10.450.80: no description PANTHER PTHR10369: 60S RIBOSOMAL PROTEIN L36A/L44 ProDom PD002841: RL44_YEAST_P02405;
Rpl43ap	TIGRFAMs TIGR00280: L37a: ribosomal protein L37a Gene3D G3DSA:2.20.25.30: no description Pfam PF01780: Ribosomal_L37ae PANTHER PTHR11517: 60S RIBOSOMAL PROTEIN L37A SUPERFAMILY SSF57829: Zn-binding ribosomal proteins	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpl43bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl43bp domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rpl43bp .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpl43bp .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpl43bp .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rpl43bp .