HIT1/YJR055W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Hit1p domain/motif information see the external links section.

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Shared domains/motifs
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This table lists proteins that share domains/motifs in common with those found in Hit1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hit1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Hit1p
Protein Motifs in common with Hit1p Other motifs in this protein (but not in Hit1p )
Bcd1p Pfam PF04438: zf-HIT
SUPERFAMILY SSF144232: HIT/MYND zinc finger-like
 PANTHER PTHR13483:SF3: SUBFAMILY NOT NAMED
PANTHER PTHR13483: UNCHARACTERIZED
Mub1p SUPERFAMILY SSF144232: HIT/MYND zinc finger-like
 PANTHER PTHR13244:SF4: ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10
PANTHER PTHR13244: ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10
Pfam PF01753: zf-MYND

Unique domains/motifs
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This table lists domains/motifs that are unique to Hit1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Hit1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Hit1p
Database source Accession number Description
PANTHER PTHR13241 THYROID RECEPTOR INTERACTING PROTEIN 3
PANTHER PTHR13241:SF1 AFR384WP

Transmembrane Domains
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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Hit1p .

Signal Peptide(s)
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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Hit1p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Hit1p .