SET2/YJL168C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Set2p domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Set2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Set2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Set2p
Protein	Motifs in common with Set2p	Other motifs in this protein (but not in Set2p )
Rkm3p	Pfam PF00856: SET SUPERFAMILY SSF82199: SET domain	Gene3D G3DSA:3.90.1410.10: no description PANTHER PTHR13271: UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
Rkm2p	SUPERFAMILY SSF82199: SET domain	Gene3D G3DSA:3.90.1410.10: no description PANTHER PTHR13271: UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE PIR superfamily PIRSF027158: Predicted lysine methylase, YDR198C type
Rkm4p	SUPERFAMILY SSF82199: SET domain Pfam PF00856: SET	PIR superfamily PIRSF011771: Predicted RuBisCO-cytochrome methylase, RMS1 type Gene3D G3DSA:3.90.1410.10: no description PANTHER PTHR13271: UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
Rsp5p	SUPERFAMILY SSF51045: WW domain SMART SM00456: Domain with 2 conserved Trp (W) residues	Gene3D G3DSA:2.60.40.150: no description Gene3D G3DSA:2.20.70.10: no description Gene3D G3DSA:3.30.2160.10: no description SUPERFAMILY SSF56204: Hect, E3 ligase catalytic domain SUPERFAMILY SSF49562: C2 domain (Calcium/lipid-binding domain, CaLB) PANTHER PTHR11254:SF81: E3 UBIQUITIN--PROTEIN LIGASE RSP5(YEAST)-RELATED PANTHER PTHR11254: HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Pfam PF00632: HECT Pfam PF00397: WW Pfam PF00168: C2 SMART SM00239: Protein kinase C conserved region SMART SM00119: Domain Homologous to E6-AP Carboxyl Terminus
Wwm1p	SMART SM00456: Domain with 2 conserved Trp (W) residues SUPERFAMILY SSF51045: WW domain	Pfam PF00397: WW Gene3D G3DSA:2.20.70.10: no description
Efm1p	SUPERFAMILY SSF82199: SET domain	PANTHER PTHR13271: UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE Gene3D G3DSA:3.90.1410.10: no description PIR superfamily PIRSF037136: Ribosomal lysine methyltransferase 1
Ctm1p	SUPERFAMILY SSF82199: SET domain	Gene3D G3DSA:3.90.1410.10: no description
Set1p	Pfam PF00856: SET PANTHER PTHR22884: SET DOMAIN PROTEINS Gene3D G3DSA:2.170.270.10: no description SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora SMART SM00508: Cysteine-rich motif following a subset of SE SUPERFAMILY SSF82199: SET domain	Pfam PF11764: N-SET Pfam PF11767: SET_assoc PANTHER PTHR22884:SF10: MIXED-LINEAGE LEUKEMIA PROTEIN, MLL PIR superfamily PIRSF037104: Histone H3-K4 methyltransferase Set1, fungal type
Set5p	Pfam PF00856: SET Gene3D G3DSA:2.170.270.10: no description SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora SUPERFAMILY SSF82199: SET domain	PANTHER PTHR12197:SF23: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR12197: SET AND MYND DOMAIN CONTAINING
Set4p	SUPERFAMILY SSF82199: SET domain Gene3D G3DSA:2.170.270.10: no description Pfam PF00856: SET SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora	SUPERFAMILY SSF57903: FYVE/PHD zinc finger Gene3D G3DSA:3.30.40.10: no description Pfam PF00628: PHD PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5 SMART SM00249: PHD zinc finger
Ess1p	SMART SM00456: Domain with 2 conserved Trp (W) residues SUPERFAMILY SSF51045: WW domain	PANTHER PTHR10657:SF4: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 (ROTAMASE PIN1)(PPIASE PIN1) PANTHER PTHR10657: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Gene3D G3DSA:2.20.70.10: no description Gene3D G3DSA:3.10.50.40: no description SUPERFAMILY SSF54534: FKBP-like Pfam PF00639: Rotamase Pfam PF00397: WW
Prp40p	SUPERFAMILY SSF51045: WW domain SMART SM00456: Domain with 2 conserved Trp (W) residues	SUPERFAMILY SSF81698: FF domain SMART SM00441: Contains two conserved F residues PANTHER PTHR11864: PRE-MRNA-PROCESSING PROTEIN PRP40 Pfam PF01846: FF Pfam PF00397: WW Gene3D G3DSA:2.20.70.10: no description Gene3D G3DSA:1.10.10.440: no description
Set3p	SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora Pfam PF00856: SET SUPERFAMILY SSF82199: SET domain Gene3D G3DSA:2.170.270.10: no description	SMART SM00249: PHD zinc finger Pfam PF00628: PHD SUPERFAMILY SSF57903: FYVE/PHD zinc finger Gene3D G3DSA:3.30.40.10: no description PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5
Set6p	SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora SUPERFAMILY SSF82199: SET domain Pfam PF00856: SET Gene3D G3DSA:2.170.270.10: no description	PANTHER PTHR12197:SF12: SET AND MYND DOMAIN CONTAINING PANTHER PTHR12197: SET AND MYND DOMAIN CONTAINING
Rkm1p	SUPERFAMILY SSF82199: SET domain	Gene3D G3DSA:3.90.1410.10: no description PANTHER PTHR13271: UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE PIR superfamily PIRSF037136: Ribosomal lysine methyltransferase 1
Urn1p	SUPERFAMILY SSF51045: WW domain SMART SM00456: Domain with 2 conserved Trp (W) residues	Pfam PF00397: WW Pfam PF01846: FF SUPERFAMILY SSF81698: FF domain PANTHER PTHR11864: PRE-MRNA-PROCESSING PROTEIN PRP40 Gene3D G3DSA:2.20.70.10: no description Gene3D G3DSA:1.10.10.440: no description SMART SM00441: Contains two conserved F residues

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Set2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Set2p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Set2p
Database source	Accession number	Description
PANTHER	PTHR22884:SF36	HUNTINGTIN INTERACTING PROTEIN 1
Pfam	PF08236	SRI
SMART	SM00570	associated with SET domains

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Set2p .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Set2p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Set2p .