This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpb4p domain/motif information see the external links section.

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This table lists proteins that share domains/motifs in common with those found in Rpb4p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpb4p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpb4p
Protein	Motifs in common with Rpb4p	Other motifs in this protein (but not in Rpb4p )
Rpc17p	Pfam PF03874: RNA_pol_Rpb4 SUPERFAMILY SSF47819: HRDC-like	PANTHER PTHR15561:SF0: SUBFAMILY NOT NAMED PANTHER PTHR15561: CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN
Sgs1p	SUPERFAMILY SSF47819: HRDC-like	PANTHER PTHR13710:SF13: DNA HELICASE HUS2 PANTHER PTHR13710: DNA HELICASE RECQ FAMILY MEMBER TIGRFAMs TIGR00614: recQ_fam: ATP-dependent DNA helicase, RecQ family SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00956: no description SMART SM00341: Helicase and RNase D C-terminal Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:1.10.150.80: no description Pfam PF11408: Helicase_Sgs1 Pfam PF09382: RQC Pfam PF00270: DEAD Pfam PF00271: Helicase_C
Rrp6p	SUPERFAMILY SSF47819: HRDC-like	PANTHER PTHR12124:SF2: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED PANTHER PTHR12124: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED SUPERFAMILY SSF53098: Ribonuclease H-like SMART SM00474: 3'-5' exonuclease SMART SM00341: Helicase and RNase D C-terminal Pfam PF01612: DNA_pol_A_exo1 Pfam PF08066: PMC2NT Pfam PF00570: HRDC Gene3D G3DSA:3.30.420.10: no description

This table lists domains/motifs that are unique to Rpb4p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpb4p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rpb4p
Database source	Accession number	Description
PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II
SMART	SM00657	DNA-directed RNA-polymerase II subunit

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

The following external links can be used to directly search external databases for domain/motif information for Rpb4p .