YJL113W Domains/Motifs and Signal Peptides 
To directly search external databases for Yjl113wp domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Yjl113wp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Yjl113wp domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Yjl113wp | ||
|---|---|---|
| Protein | Motifs in common with Yjl113wp | Other motifs in this protein (but not in Yjl113wp ) |
| Yar009cp | SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
none |
| Ybl005w-bp | SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
Pfam PF01021: TYA |
| Ybl100w-bp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Ybr012w-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ycl019wp | Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Gfd2p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
none |
| Ycl074wp | Pfam PF07727: RVT_2 SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT) |
| Ycl075wp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT) |
| Pol3p | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
SMART SM00486: DNA polymerase type-B family Gene3D G3DSA:3.90.1600.10: no description Gene3D G3DSA:1.10.287.690: no description PANTHER PTHR10322:SF11: DNA POLYMERASE DELTA CATALYTIC SUBUNIT PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT PRINTS PR00106: DNAPOLB TIGRFAMs TIGR00592: pol2: DNA polymerase (pol2) Pfam PF00136: DNA_pol_B Pfam PF03104: DNA_pol_B_exo1 Pfam PF14260: zf-C4pol |
| Ydr034c-dp | SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Ydr098c-bp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ydr210c-dp | SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ydr210w-bp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Ydr261c-dp | Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ydr261w-bp | SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Ydr316w-bp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ydr365w-bp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Rad30p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF00817: IMS Pfam PF11799: IMS_C Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:1.10.150.20: no description Gene3D G3DSA:3.30.1490.100: no description SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain PANTHER PTHR11076:SF9: GB DEF: DBH1P PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| Ydr514cp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like |
none |
| Yer138cp | Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yer160cp | Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:3.30.420.10: no description |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yfl002w-ap | Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Rpo41p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR10102: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL Gene3D G3DSA:1.10.1320.10: no description Gene3D G3DSA:1.10.287.260: no description Gene3D G3DSA:3.30.70.370: no description Gene3D G3DSA:1.10.287.280: no description Gene3D G3DSA:1.10.150.20: no description Pfam PF00940: RNA_pol |
| Pan2p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
SUPERFAMILY SSF54001: Cysteine proteinases SUPERFAMILY SSF50978: WD40 repeat-like Gene3D G3DSA:2.130.10.10: no description Pfam PF13423: UCH_1 Pfam PF00929: RNase_T SMART SM00479: no description PANTHER PTHR15728:SF0: SUBFAMILY NOT NAMED PANTHER PTHR15728: UBIQUITIN SPECIFIC PROTEASE 52 / POLY(A) RIBONUCLEASE SUBUNIT PAN2 |
| Ygr027w-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ygr038c-bp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ygr109w-bp | Gene3D G3DSA:3.30.420.10: no description Pfam PF00665: rve SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description SMART SM00343: zinc finger Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF03732: Retrotrans_gag SUPERFAMILY SSF50630: Acid proteases PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN |
| Ygr161c-dp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ygr161w-bp | SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Rnh70p | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like |
PANTHER PTHR12801:SF42: RNA EXONUCLEASE-RELATED PANTHER PTHR12801: EXONUCLEASE SMART SM00479: no description Pfam PF00929: RNase_T |
| Yhl009w-ap | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
PANTHER PTHR11439:SF125: SUBFAMILY NOT NAMED |
| Yhl009w-bp | PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
none |
| Yhr214c-bp | Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yil080wp | Gene3D G3DSA:3.30.420.10: no description Pfam PF00665: rve SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF03732: Retrotrans_gag PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN SMART SM00343: zinc finger SUPERFAMILY SSF50630: Acid proteases |
| Yil082w-ap | SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description |
SUPERFAMILY SSF50630: Acid proteases Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF03732: Retrotrans_gag SMART SM00343: zinc finger PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description |
| Mrs1p | Gene3D G3DSA:3.30.420.10: no description |
Pfam PF09159: Ydc2-catalyt |
| Yjr027wp | Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yjr029wp | Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Cce1p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
Pfam PF09159: Ydc2-catalyt |
| Ylr035c-ap | Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
none |
| Rex2p | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like |
Pfam PF00929: RNase_T PANTHER PTHR11046: OLIGORIBONUCLEASE, MITOCHONDRIAL SMART SM00479: no description |
| Rex3p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
PANTHER PTHR12801:SF42: RNA EXONUCLEASE-RELATED PANTHER PTHR12801: EXONUCLEASE SMART SM00479: no description Pfam PF00929: RNase_T |
| Ylr157c-bp | Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ylr227w-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Vid22p | SUPERFAMILY SSF53098: Ribonuclease H-like |
none |
| Ylr410w-bp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Yml039wp | Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yml045wp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ymr045cp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA |
| Ymr050cp | Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Rnh1p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
SUPERFAMILY SSF55658: L9 N-domain-like PANTHER PTHR10642: RIBONUCLEASE H1 Gene3D G3DSA:3.40.970.10: no description Pfam PF00075: RNase_H Pfam PF01693: Cauli_VI PIR superfamily PIRSF036852: Ribonuclease H1, eukaryotic type |
| Ynl054w-bp | Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Rnh201p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
PANTHER PTHR10954:SF7: RIBONUCLEASE H2 SUBUNIT A PANTHER PTHR10954: RIBONUCLEASE H2 SUBUNIT A Pfam PF01351: RNase_HII TIGRFAMs TIGR00729: TIGR00729: ribonuclease HII Gene3D G3DSA:1.10.10.460: no description |
| Pol1p | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
Gene3D G3DSA:3.90.1600.10: no description Gene3D G3DSA:1.10.287.690: no description SMART SM00486: DNA polymerase type-B family Pfam PF00136: DNA_pol_B Pfam PF08996: zf-DNA_Pol Pfam PF03104: DNA_pol_B_exo1 Pfam PF12254: DNA_pol_alpha_N PANTHER PTHR10322:SF3: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT PRINTS PR00106: DNAPOLB TIGRFAMs TIGR00592: pol2: DNA polymerase (pol2) |
| Pol2p | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
SMART SM00486: DNA polymerase type-B family Pfam PF08490: DUF1744 Pfam PF03104: DNA_pol_B_exo1 Pfam PF00136: DNA_pol_B Gene3D G3DSA:1.10.287.690: no description PANTHER PTHR10670:SF0: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A PANTHER PTHR10670: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A |
| Ynl284c-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Pop2p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
Pfam PF04857: CAF1 PANTHER PTHR10797: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT |
| Rex4p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
Pfam PF00929: RNase_T PANTHER PTHR12801:SF5: RNA EXONUCLEASE 4 PANTHER PTHR12801: EXONUCLEASE SMART SM00479: no description |
| Yol103w-bp | PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Rrp6p | SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
PANTHER PTHR12124:SF2: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED PANTHER PTHR12124: POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED SUPERFAMILY SSF47819: HRDC-like SMART SM00474: 3'-5' exonuclease SMART SM00341: Helicase and RNase D C-terminal Pfam PF01612: DNA_pol_A_exo1 Pfam PF08066: PMC2NT Pfam PF00570: HRDC |
| Yor142w-bp | Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yor192c-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Mip1p | SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
PRINTS PR00867: DNAPOLG PANTHER PTHR10267:SF0: DNA POLYMERASE SUBUNIT GAMMA-1 PANTHER PTHR10267: DNA POLYMERASE SUBUNIT GAMMA-1 Pfam PF00476: DNA_pol_A PIR superfamily PIRSF000797: DNA-directed DNA polymerase, mitochondrial type SMART SM00482: DNA polymerase A domain Gene3D G3DSA:3.30.70.370: no description Gene3D G3DSA:1.10.150.20: no description |
| Yor343w-bp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve |
Pfam PF01021: TYA Pfam PF13976: gag_pre-integrs |
| Rev1p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF00817: IMS Pfam PF00533: BRCT Pfam PF11799: IMS_C PANTHER PTHR11076:SF13: TERMINAL DEOXYCYTIDYL TRANSFERASE REV1 PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER SUPERFAMILY SSF52113: BRCT domain SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain Gene3D G3DSA:3.40.50.10190: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:1.10.150.20: no description Gene3D G3DSA:3.30.1490.100: no description SMART SM00292: breast cancer carboxy-terminal domain PIR superfamily PIRSF036573: DNA repair protein, Rev1 type |
| Ypl060c-ap | SUPERFAMILY SSF53098: Ribonuclease H-like PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description |
none |
| Rev3p | SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description |
PRINTS PR00106: DNAPOLB PANTHER PTHR10322:SF5: DNA POLYMERASE ZETA CATALYTIC SUBUNIT PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT Pfam PF00136: DNA_pol_B Pfam PF03104: DNA_pol_B_exo1 Pfam PF14260: zf-C4pol SMART SM00486: DNA polymerase type-B family Gene3D G3DSA:3.90.1600.10: no description Gene3D G3DSA:1.10.287.690: no description |
| Ypl257w-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ypr137c-bp | Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ypr158c-dp | Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA |
| Ypr158w-bp | Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ai1p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:1.20.210.10: no description SMART SM00507: HNH nucleases PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE) PANTHER PTHR19446: REVERSE TRANSCRIPTASES SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like Pfam PF00078: RVT_1 Pfam PF01348: Intron_maturas2 |
| Ai2p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PRINTS PR01165: CYCOXIDASEI PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE) PANTHER PTHR19446: REVERSE TRANSCRIPTASES Gene3D G3DSA:1.20.210.10: no description SMART SM00507: HNH nucleases Pfam PF00078: RVT_1 Pfam PF01348: Intron_maturas2 Pfam PF00115: COX1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like |
This table lists domains/motifs that are unique to Yjl113wp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Yjl113wp domain/motif information see the external links section.
Last updated on 2013-05-06
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Yjl113wp .
