RAD2/YGR258C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rad2p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rad2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rad2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rad2p
Protein	Motifs in common with Rad2p	Other motifs in this protein (but not in Rad2p )
Din7p	PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:3.40.50.1010: no description Gene3D G3DSA:1.10.150.20: no description PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo	PANTHER PTHR11081:SF8: EXONUCLEASE 1
Fcf1p	SUPERFAMILY SSF88723: PIN domain-like Gene3D G3DSA:3.40.50.1010: no description	SMART SM00670: Large family of predicted nucleotide-binding Pfam PF04900: Fcf1 PANTHER PTHR12416: UNCHARACTERIZED
Rad30p	Gene3D G3DSA:1.10.150.20: no description	Pfam PF00817: IMS Pfam PF11799: IMS_C Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.1490.100: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain PANTHER PTHR11076:SF9: GB DEF: DBH1P PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER
Yen1p	Gene3D G3DSA:3.40.50.1010: no description SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain Pfam PF00867: XPG_I PRINTS PR00853: XPGRADSUPER	PANTHER PTHR11081:SF12: NUCLEASE
Rad51p	Gene3D G3DSA:1.10.150.20: no description	SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47794: Rad51 N-terminal domain-like Pfam PF08423: Rad51 PIR superfamily PIRSF005856: DNA repair and recombination protein, Rad51 type SMART SM00382: ATPases associated with a variety of cellula Gene3D G3DSA:3.40.50.300: no description PANTHER PTHR22942:SF12: DNA REPAIR PROTEIN RAD51 PANTHER PTHR22942: RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER TIGRFAMs TIGR02239: recomb_RAD51: DNA repair protein RAD51
Brr2p	Gene3D G3DSA:1.10.150.20: no description	SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF02889: Sec63 Pfam PF00270: DEAD Pfam PF00271: Helicase_C Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.3380.10: no description Gene3D G3DSA:2.60.40.150: no description PANTHER PTHR11752:SF7: U520 PANTHER PTHR11752: HELICASE SKI2W SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00611: Domain of unknown function in Sec63p, Brr2p SMART SM00973: Sec63 Brl domain
Dmc1p	Gene3D G3DSA:1.10.150.20: no description	TIGRFAMs TIGR02238: recomb_DMC1: meiotic recombinase Dmc1 SMART SM00382: ATPases associated with a variety of cellula PANTHER PTHR22942:SF13: MEIOTIC RECOMBINATION PROTEIN DMC1 PANTHER PTHR22942: RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER Pfam PF08423: Rad51 Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47794: Rad51 N-terminal domain-like PIR superfamily PIRSF005856: DNA repair and recombination protein, Rad51 type
Rpo41p	Gene3D G3DSA:1.10.150.20: no description	PANTHER PTHR10102: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL Gene3D G3DSA:1.10.1320.10: no description Gene3D G3DSA:1.10.287.260: no description Gene3D G3DSA:3.30.70.370: no description Gene3D G3DSA:1.10.287.280: no description Pfam PF00940: RNA_pol SUPERFAMILY SSF56672: DNA/RNA polymerases
Rad27p	Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo PRINTS PR00853: XPGRADSUPER PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY Gene3D G3DSA:3.40.50.1010: no description Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain	PANTHER PTHR11081:SF9: FLAP ENDONUCLEASE-1
Nmd4p	Gene3D G3DSA:3.40.50.1010: no description	ProDom PD112888: NMD4_YEAST_Q12129; SMART SM00670: Large family of predicted nucleotide-binding
Mkt1p	Gene3D G3DSA:3.40.50.1010: no description Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SUPERFAMILY SSF88723: PIN domain-like	PANTHER PTHR32221:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32221: FAMILY NOT NAMED Pfam PF12246: MKT1_C Pfam PF12247: MKT1_N
Dis3p	Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like	SMART SM00670: Large family of predicted nucleotide-binding SMART SM00955: no description SMART SM00316: Ribosomal protein S1-like RNA-binding domain PANTHER PTHR23355:SF13: MITOTIC CONTROL PROTEIN DIS3 PANTHER PTHR23355: RIBONUCLEASE Pfam PF00773: RNB Pfam PF13638: PIN_4
Utp23p	SUPERFAMILY SSF88723: PIN domain-like Gene3D G3DSA:3.40.50.1010: no description	Pfam PF04900: Fcf1 PANTHER PTHR12416: UNCHARACTERIZED
Exo1p	SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo Pfam PF00752: XPG_N Pfam PF00867: XPG_I PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:3.40.50.1010: no description Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain	PANTHER PTHR11081:SF8: EXONUCLEASE 1
Swt1p	Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like	SMART SM00670: Large family of predicted nucleotide-binding Pfam PF13638: PIN_4 PANTHER PTHR16161:SF0: SUBFAMILY NOT NAMED PANTHER PTHR16161: UNCHARACTERIZED
Mip1p	Gene3D G3DSA:1.10.150.20: no description	PRINTS PR00867: DNAPOLG PANTHER PTHR10267:SF0: DNA POLYMERASE SUBUNIT GAMMA-1 PANTHER PTHR10267: DNA POLYMERASE SUBUNIT GAMMA-1 Pfam PF00476: DNA_pol_A PIR superfamily PIRSF000797: DNA-directed DNA polymerase, mitochondrial type SMART SM00482: DNA polymerase A domain Gene3D G3DSA:3.30.70.370: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like
Rev1p	Gene3D G3DSA:1.10.150.20: no description	Pfam PF00817: IMS Pfam PF00533: BRCT Pfam PF11799: IMS_C PANTHER PTHR11076:SF13: TERMINAL DEOXYCYTIDYL TRANSFERASE REV1 PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF52113: BRCT domain SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain Gene3D G3DSA:3.40.50.10190: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.1490.100: no description SMART SM00292: breast cancer carboxy-terminal domain PIR superfamily PIRSF036573: DNA repair protein, Rev1 type

Unique domains/motifs

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This table lists domains/motifs that are unique to Rad2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rad2p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rad2p
Database source	Accession number	Description
PRINTS	PR00066	XRODRMPGMNTG
PANTHER	PTHR11081:SF13	DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS XERODERMA PIGMENTOSUM GROUP G-COMPL
TIGRFAMs	TIGR00600	rad2: DNA excision repair protein (rad2)

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rad2p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rad2p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Rad2p .