BRF1/YGR246C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Brf1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Brf1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Brf1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Brf1p
Protein	Motifs in common with Brf1p	Other motifs in this protein (but not in Brf1p )
Cln3p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR10177:SF40: SUBFAMILY NOT NAMED PANTHER PTHR10177: CYCLINE Pfam PF00134: Cyclin_N
Rmd1p	SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR16255:SF0: SUBFAMILY NOT NAMED PANTHER PTHR16255: UNCHARACTERIZED Pfam PF02582: DUF155
Pcl2p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	Pfam PF00134: Cyclin_N PANTHER PTHR31864:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31864: FAMILY NOT NAMED PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type
Clb3p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	PIR superfamily PIRSF001771: Cyclin, A/B/D/E types Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE
Pcl9p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type Pfam PF00134: Cyclin_N PANTHER PTHR31864:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31864: FAMILY NOT NAMED
Rpc11p	Gene3D G3DSA:2.20.25.10: no description SUPERFAMILY SSF57783: Zinc beta-ribbon	SMART SM00661: RNA polymerase subunit SMART SM00440: C2C2 Zinc finger Pfam PF01096: TFIIS_C Pfam PF02150: RNA_POL_M_15KD PANTHER PTHR11239:SF2: DNA-DIRECTED RNA POLYMERASE III PANTHER PTHR11239: DNA-DIRECTED RNA POLYMERASE
Dst1p	SUPERFAMILY SSF57783: Zinc beta-ribbon Gene3D G3DSA:2.20.25.10: no description	Pfam PF07500: TFIIS_M Pfam PF01096: TFIIS_C Pfam PF08711: Med26 PANTHER PTHR11477: TRANSCRIPTION ELONGATION FACTOR S-II SUPERFAMILY SSF46942: Elongation factor TFIIS domain 2 SUPERFAMILY SSF47676: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 PIR superfamily PIRSF006704: Transcription elongation factor, IIS type TIGRFAMs TIGR01385: TFSII: transcription elongation factor S-II Gene3D G3DSA:1.20.930.10: no description Gene3D G3DSA:1.10.472.30: no description SMART SM00509: Domain in the N-terminus of transcription el SMART SM00510: Domain in the central regions of transcripti SMART SM00440: C2C2 Zinc finger
Rpb9p	SUPERFAMILY SSF57783: Zinc beta-ribbon Gene3D G3DSA:2.20.25.10: no description	SMART SM00661: RNA polymerase subunit SMART SM00440: C2C2 Zinc finger Pfam PF02150: RNA_POL_M_15KD Pfam PF01096: TFIIS_C PANTHER PTHR11239:SF1: DNA-DIRECTED RNA POLYMERASE II PANTHER PTHR11239: DNA-DIRECTED RNA POLYMERASE
Snt2p	SUPERFAMILY SSF57783: Zinc beta-ribbon	SUPERFAMILY SSF57903: FYVE/PHD zinc finger SUPERFAMILY SSF46689: Homeodomain-like SMART SM00439: Bromo adjacent homology domain SMART SM00249: PHD zinc finger SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF01426: BAH Pfam PF00628: PHD Pfam PF13832: zf-HC5HC2H_2 Gene3D G3DSA:3.30.40.10: no description PANTHER PTHR13793:SF12: PHD FINGER PROTEIN PANTHER PTHR13793: PHD FINGER PROTEINS
Clb1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001771: Cyclin, A/B/D/E types
Clb6p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob	Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001771: Cyclin, A/B/D/E types
Pcl5p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF08613: Cyclin
Ctk2p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	PANTHER PTHR10026:SF4: GB DEF: CTD KINASE BETA SUBUNIT (CTD KINASE 38 KDA SUBUNIT) (CTDK-I BETA SUBUNIT) PANTHER PTHR10026: CYCLIN Pfam PF00134: Cyclin_N
Rpa12p	Gene3D G3DSA:2.20.25.10: no description SUPERFAMILY SSF57783: Zinc beta-ribbon	PANTHER PTHR11239:SF3: DNA-DIRECTED RNA POLYMERASE I PANTHER PTHR11239: DNA-DIRECTED RNA POLYMERASE SMART SM00661: RNA polymerase subunit SMART SM00440: C2C2 Zinc finger Pfam PF01096: TFIIS_C Pfam PF02150: RNA_POL_M_15KD
Tfa1p	Pfam PF08271: TF_Zn_Ribbon SUPERFAMILY SSF57783: Zinc beta-ribbon	PANTHER PTHR13097:SF3: GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1 PANTHER PTHR13097: TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT SMART SM00531: Transcription initiation factor IIE Pfam PF02002: TFIIE_alpha Gene3D G3DSA:3.30.40.10: no description
Elf1p	SUPERFAMILY SSF57783: Zinc beta-ribbon	Pfam PF05129: Elf1 PANTHER PTHR20934:SF0: SUBFAMILY NOT NAMED PANTHER PTHR20934: UNCHARACTERIZED
Clb4p	Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob	PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PIR superfamily PIRSF001771: Cyclin, A/B/D/E types
Bur2p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	none
Cln1p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	PIR superfamily PIRSF001770: G1 cyclin, CLN1/CLN2/Puc1 types PANTHER PTHR10177:SF11: G1/S-SPECIFIC CYCLIN CLN PANTHER PTHR10177: CYCLINE Pfam PF00134: Cyclin_N
Ssn8p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob	Pfam PF00134: Cyclin_N PANTHER PTHR10026:SF47: RNA POLYMERASE II HOLOENZYME CYCLIN-LIKE SUBUNIT PANTHER PTHR10026: CYCLIN PIR superfamily PIRSF028758: Cyclin, C/H/G types
Pcl1p	SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description SMART SM00385: domain present in cyclins, TFIIB and Retinob	Pfam PF00134: Cyclin_N PIR superfamily PIRSF016511: Cyclin, fungal Pcl/HCS26 type PANTHER PTHR10177:SF85: SUBFAMILY NOT NAMED PANTHER PTHR10177: CYCLINE
Trm112p	Gene3D G3DSA:2.20.25.10: no description	Pfam PF03966: Trm112p PANTHER PTHR12773:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12773: UPF0315 PROTEIN-RELATED\
Cln2p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	PANTHER PTHR10177:SF11: G1/S-SPECIFIC CYCLIN CLN PANTHER PTHR10177: CYCLINE Pfam PF00134: Cyclin_N PIR superfamily PIRSF001770: G1 cyclin, CLN1/CLN2/Puc1 types
Ccl1p	SUPERFAMILY SSF47954: Cyclin-like SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description	Pfam PF00134: Cyclin_N PANTHER PTHR10026:SF8: CYCLIN H PANTHER PTHR10026: CYCLIN TIGRFAMs TIGR00569: ccl1: cyclin ccl1
Sua7p	Gene3D G3DSA:2.20.25.10: no description Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like SUPERFAMILY SSF57783: Zinc beta-ribbon PRINTS PR00685: TIFACTORIIB SMART SM00385: domain present in cyclins, TFIIB and Retinob PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED Pfam PF00382: TFIIB Pfam PF08271: TF_Zn_Ribbon	PANTHER PTHR11618:SF13: TRANSCRIPTION INITIATION FACTOR IIB
Clb2p	SMART SM00385: domain present in cyclins, TFIIB and Retinob SUPERFAMILY SSF47954: Cyclin-like Gene3D G3DSA:1.10.472.10: no description	Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C PIR superfamily PIRSF001771: Cyclin, A/B/D/E types PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE
Clb5p	SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like	PANTHER PTHR10177:SF27: CYCLIN B PANTHER PTHR10177: CYCLINE PIR superfamily PIRSF001771: Cyclin, A/B/D/E types Pfam PF00134: Cyclin_N Pfam PF02984: Cyclin_C

Unique domains/motifs

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This table lists domains/motifs that are unique to Brf1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Brf1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Brf1p
Database source	Accession number	Description
Gene3D	G3DSA:1.20.5.650	no description
PANTHER	PTHR11618:SF4	TRANSCRIPTION FACTOR IIIB
Pfam	PF07741	BRF1

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Brf1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Brf1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Brf1p .