SKI6/YGR195W Domains/Motifs and Signal Peptides 
To directly search external databases for Ski6p domain/motif information see the external links section.
| Click on image for expanded interactive view |
|---|
This table lists proteins that share domains/motifs in common with those found in Ski6p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Ski6p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Ski6p | ||
|---|---|---|
| Protein | Motifs in common with Ski6p | Other motifs in this protein (but not in Ski6p ) |
| Pim1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SMART SM00464: Found in ATP-dependent protease La (LON) SMART SM00382: ATPases associated with a variety of cellula TIGRFAMs TIGR00763: lon: ATP-dependent protease La SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF88697: PUA domain-like PRINTS PR00830: ENDOLAPTASE Pfam PF05362: Lon_C Pfam PF02190: LON Pfam PF00004: AAA Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR10046:SF23: LON PROTEASE HOMOLOG, MITOCHONDRIAL PANTHER PTHR10046: ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| Gal1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PIR superfamily PIRSF000530: Galactokinase PRINTS PR00959: MEVGALKINASE PRINTS PR00473: GALCTOKINASE Pfam PF10509: GalKase_gal_bdg Pfam PF00288: GHMP_kinases_N Pfam PF08544: GHMP_kinases_C Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.890: no description PANTHER PTHR10457:SF7: GALACTOKINASE 2 PANTHER PTHR10457: MEVALONATE KINASE/GALACTOKINASE TIGRFAMs TIGR00131: gal_kin: galactokinase |
| Mrps9p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF00380: Ribosomal_S9 PANTHER PTHR21569: RIBOSOMAL PROTEIN S9 Gene3D G3DSA:3.30.230.10: no description |
| Mrps5p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.160.20: no description Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR13718:SF2: 30S RIBOSOMAL PROTEIN S5 PANTHER PTHR13718: RIBOSOMAL S SUBUNIT Pfam PF00333: Ribosomal_S5 Pfam PF03719: Ribosomal_S5_C SUPERFAMILY SSF54768: dsRNA-binding domain-like |
| Rrp43p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Pfam PF01138: RNase_PH |
PANTHER PTHR11097:SF1: GB DEF: EXOSOME COMPLEX EXONUCLEASE RRP43 (EC 3.1.13.-) (RIBOSOMAL RNA PROCESSING PROTEI PANTHER PTHR11097: EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) |
| Yih1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR16301: IMPACT-RELATED SMART SM00591: no description SUPERFAMILY SSF54495: UBC-like Gene3D G3DSA:3.10.110.10: no description Gene3D G3DSA:3.30.230.30: no description Pfam PF01205: UPF0029 Pfam PF05773: RWD |
| Rps16bp | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF00380: Ribosomal_S9 PANTHER PTHR21569: RIBOSOMAL PROTEIN S9 Gene3D G3DSA:3.30.230.10: no description |
| Rrp42p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Pfam PF01138: RNase_PH |
PANTHER PTHR11097:SF2: EXOSOME COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA PROCESSING PROTEIN 42), INVERTEBRATE PANTHER PTHR11097: EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) |
| Ydl177cp | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR16301: IMPACT-RELATED Gene3D G3DSA:3.30.230.30: no description Pfam PF01205: UPF0029 |
| Gal3p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PANTHER PTHR10457:SF7: GALACTOKINASE 2 PANTHER PTHR10457: MEVALONATE KINASE/GALACTOKINASE TIGRFAMs TIGR00131: gal_kin: galactokinase Pfam PF10509: GalKase_gal_bdg Pfam PF00288: GHMP_kinases_N Pfam PF08544: GHMP_kinases_C Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.890: no description PIR superfamily PIRSF000530: Galactokinase PRINTS PR00959: MEVGALKINASE PRINTS PR00473: GALCTOKINASE |
| Rrp45p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like Pfam PF01138: RNase_PH Pfam PF03725: RNase_PH_C |
PANTHER PTHR11097:SF8: EXOSOME COMPLEX EXONUCLEASE RRP45 (POLYMYOSITIS/SCLERODERMA AUTOANTIGEN 1) (RIBOSOMAL RNA PROCESSING PROTEIN 45) PANTHER PTHR11097: EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) |
| Eft2p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50447: Translation proteins SUPERFAMILY SSF54980: EF-G C-terminal domain-like TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain PANTHER PTHR23115:SF4: EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 PANTHER PTHR23115: TRANSLATION FACTOR SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus PRINTS PR00315: ELONGATNFCT |
| Rps2p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
TIGRFAMs TIGR01020: rpsE_arch: ribosomal protein S5 SUPERFAMILY SSF54768: dsRNA-binding domain-like Pfam PF00333: Ribosomal_S5 Pfam PF03719: Ribosomal_S5_C Gene3D G3DSA:3.30.160.20: no description Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR13718:SF4: 40S RIBOSOMAL PROTEIN S2 PANTHER PTHR13718: RIBOSOMAL S SUBUNIT |
| Rrp46p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like SUPERFAMILY SSF55666: Ribonuclease PH domain 2-like Gene3D G3DSA:3.30.230.70: no description PANTHER PTHR11953: RIBONUCLEASE PH RELATED Pfam PF01138: RNase_PH Pfam PF03725: RNase_PH_C |
none |
| Mtr3p | PANTHER PTHR11953: RIBONUCLEASE PH RELATED Pfam PF01138: RNase_PH |
none |
| Thr1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PIR superfamily PIRSF000676: Homoserine kinase Pfam PF00288: GHMP_kinases_N Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.890: no description TIGRFAMs TIGR00191: thrB: homoserine kinase PANTHER PTHR20861:SF1: HOMOSERINE KINASE PANTHER PTHR20861: HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PRINTS PR00958: HOMSERKINASE |
| Snu114p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description PANTHER PTHR23115:SF2: TRANSLATION ELONGATION FACTOR 2-RELATED PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54980: EF-G C-terminal domain-like SUPERFAMILY SSF50447: Translation proteins SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus Pfam PF00009: GTP_EFTU Pfam PF03144: GTP_EFTU_D2 Pfam PF03764: EFG_IV Pfam PF00679: EFG_C |
| Mlh2p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF01119: DNA_mis_repair Pfam PF02518: HATPase_c PANTHER PTHR10073:SF9: DNA MISMATCH REPAIR PROTEIN PMS1 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) TIGRFAMs TIGR00585: mutl: DNA mismatch repair protein MutL Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| Mef1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50447: Translation proteins SUPERFAMILY SSF54980: EF-G C-terminal domain-like PANTHER PTHR23115:SF66: SUBFAMILY NOT NAMED PANTHER PTHR23115: TRANSLATION FACTOR Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus PRINTS PR00315: ELONGATNFCT TIGRFAMs TIGR00484: EF-G: translation elongation factor G TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain |
| Rps16ap | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PANTHER PTHR21569: RIBOSOMAL PROTEIN S9 Pfam PF00380: Ribosomal_S9 Gene3D G3DSA:3.30.230.10: no description |
| Mlh1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF01119: DNA_mis_repair Pfam PF13589: HATPase_c_3 TIGRFAMs TIGR00585: mutl: DNA mismatch repair protein MutL PANTHER PTHR10073:SF11: DNA MISMATCH REPAIR PROTEIN MLH1 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description |
| Hsc82p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PRINTS PR00775: HEATSHOCK90 SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF110942: HSP90 C-terminal domain PANTHER PTHR11528: HEAT SHOCK PROTEIN 90 Pfam PF00183: HSP90 Pfam PF02518: HATPase_c Gene3D G3DSA:3.30.565.10: no description PIR superfamily PIRSF002583: Heat shock protein, HSP90/HTPG types SMART SM00387: Histidine kinase-like ATPases |
| Erg12p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.890: no description Pfam PF00288: GHMP_kinases_N PANTHER PTHR10457:SF4: MEVALONATE KINASE PANTHER PTHR10457: MEVALONATE KINASE/GALACTOKINASE SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PRINTS PR00959: MEVGALKINASE TIGRFAMs TIGR00549: mevalon_kin: mevalonate kinase |
| Erg8p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.890: no description PIR superfamily PIRSF017288: Phosphomevalonate kinase, eukaryotic GHMP type TIGRFAMs TIGR01219: Pmev_kin_ERG8: phosphomevalonate kinase PANTHER PTHR31814: FAMILY NOT NAMED Pfam PF00288: GHMP_kinases_N Pfam PF08544: GHMP_kinases_C |
| Pms1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF118116: DNA mismatch repair protein MutL PANTHER PTHR10073:SF9: DNA MISMATCH REPAIR PROTEIN PMS1 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) TIGRFAMs TIGR00585: mutl: DNA mismatch repair protein MutL SMART SM00853: MutL C terminal dimerisation domain Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description Pfam PF01119: DNA_mis_repair Pfam PF08676: MutL_C Pfam PF13589: HATPase_c_3 |
| Top2p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF56719: Type II DNA topoisomerase SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SMART SM00387: Histidine kinase-like ATPases SMART SM00433: TopoisomeraseII SMART SM00434: DNA Topoisomerase IV PRINTS PR01158: TOPISMRASEII PRINTS PR00418: TPI2FAMILY PANTHER PTHR10169:SF19: DNA TOPOISOMERASE 2 PANTHER PTHR10169: DNA TOPOISOMERASE/GYRASE Pfam PF00521: DNA_topoisoIV Pfam PF00204: DNA_gyraseB Pfam PF02518: HATPase_c Pfam PF01751: Toprim Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.40.50.670: no description Gene3D G3DSA:3.30.1490.30: no description Gene3D G3DSA:3.90.199.10: no description Gene3D G3DSA:3.30.1360.40: no description Gene3D G3DSA:1.10.268.10: no description |
| Ria1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54980: EF-G C-terminal domain-like SUPERFAMILY SSF50447: Translation proteins PANTHER PTHR23115:SF3: TRANSLATION ELONGATION FACTOR PANTHER PTHR23115: TRANSLATION FACTOR PRINTS PR00315: ELONGATNFCT Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description Pfam PF00009: GTP_EFTU Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 SMART SM00838: Elongation factor G C-terminus TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain |
| Mvd1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
TIGRFAMs TIGR01240: mevDPdecarb: diphosphomevalonate decarboxylase SUPERFAMILY SSF55060: GHMP Kinase, C-terminal domain PANTHER PTHR10977:SF2: DIPHOSPHOMEVALONATE DECARBOXYLASE PANTHER PTHR10977: DIPHOSPHOMEVALONATE DECARBOXYLASE PIR superfamily PIRSF015950: Diphosphomevalonate decarboxylase Pfam PF00288: GHMP_kinases_N Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.890: no description |
| Eft1p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
SMART SM00889: Elongation factor G, domain IV SMART SM00838: Elongation factor G C-terminus TIGRFAMs TIGR00231: small_GTP: small GTP-binding protein domain Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:3.90.1430.10: no description Gene3D G3DSA:2.40.30.10: no description Gene3D G3DSA:3.30.70.870: no description Gene3D G3DSA:3.30.230.10: no description Gene3D G3DSA:3.30.70.240: no description PRINTS PR00315: ELONGATNFCT PANTHER PTHR23115:SF4: EUKARYOTIC TRANSLATION ELONGATION FACTOR 2 PANTHER PTHR23115: TRANSLATION FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF50447: Translation proteins SUPERFAMILY SSF54980: EF-G C-terminal domain-like Pfam PF00009: GTP_EFTU Pfam PF03764: EFG_IV Pfam PF00679: EFG_C Pfam PF03144: GTP_EFTU_D2 |
| His3p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Pfam PF00475: IGPD PANTHER PTHR23133:SF2: IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 PANTHER PTHR23133: IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 Gene3D G3DSA:3.30.230.40: no description |
| Mlh3p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
Gene3D G3DSA:3.30.565.10: no description Gene3D G3DSA:3.30.230.10: no description PANTHER PTHR10073:SF7: DNA MISMATCH REPAIR PROTEIN MLH3 PANTHER PTHR10073: DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF118116: DNA mismatch repair protein MutL SMART SM00853: MutL C terminal dimerisation domain Pfam PF13589: HATPase_c_3 Pfam PF08676: MutL_C |
| Hsp82p | SUPERFAMILY SSF54211: Ribosomal protein S5 domain 2-like |
PRINTS PR00775: HEATSHOCK90 PIR superfamily PIRSF002583: Heat shock protein, HSP90/HTPG types SUPERFAMILY SSF55874: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SUPERFAMILY SSF110942: HSP90 C-terminal domain PANTHER PTHR11528: HEAT SHOCK PROTEIN 90 SMART SM00387: Histidine kinase-like ATPases Pfam PF00183: HSP90 Pfam PF02518: HATPase_c Gene3D G3DSA:3.30.565.10: no description |
This table lists domains/motifs that are unique to Ski6p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Ski6p domain/motif information see the external links section.
Last updated on 2013-05-06
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Ski6p .
