SKN1/YGR143W Domains/Motifs and Signal Peptides 
To directly search external databases for Skn1p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Skn1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Skn1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Skn1p | ||
|---|---|---|
| Protein | Motifs in common with Skn1p | Other motifs in this protein (but not in Skn1p ) |
| Cne1p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases Gene3D G3DSA:2.60.120.200: no description |
Pfam PF00262: Calreticulin PRINTS PR00626: CALRETICULIN SUPERFAMILY SSF63887: P-domain of calnexin/calreticulin PANTHER PTHR11073:SF1: CALNEXIN PANTHER PTHR11073: CALRETICULIN AND CALNEXIN |
| Utr2p | Gene3D G3DSA:2.60.120.200: no description SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
PIR superfamily PIRSF037299: Predicted glycosidase CRH1 Pfam PF00722: Glyco_hydro_16 PANTHER PTHR31910: FAMILY NOT NAMED |
| Emp47p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases Gene3D G3DSA:2.60.120.200: no description |
PANTHER PTHR12223:SF9: PROTEIN EMP47 PANTHER PTHR12223: VESICULAR MANNOSE-BINDING LECTIN Pfam PF03388: Lectin_leg-like PIR superfamily PIRSF018136: L-type lectin, yeast type |
| Vid30p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
SMART SM00449: Domain in SPla and the RYanodine Receptor. SMART SM00668: C-terminal to LisH motif. SMART SM00757: CT11-RanBPM Pfam PF00622: SPRY Pfam PF10607: CLTH PANTHER PTHR12864: RAN BINDING PROTEIN 9-RELATED |
| Crh1p | Gene3D G3DSA:2.60.120.200: no description SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
Pfam PF00722: Glyco_hydro_16 PANTHER PTHR10963:SF14: BETA-GLUCANASE PANTHER PTHR10963: GLYCOSYL HYDROLASE-RELATED PIR superfamily PIRSF037299: Predicted glycosidase CRH1 |
| Suc2p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
SMART SM00640: Glycosyl hydrolases family Gene3D G3DSA:2.60.120.560: no description PANTHER PTHR30175:SF0: INVERTASE-RELATED PANTHER PTHR30175: INVERTASE-RELATED Pfam PF00251: Glyco_hydro_32N Pfam PF08244: Glyco_hydro_32C SUPERFAMILY SSF75005: Arabinanase/levansucrase/invertase |
| Ree1p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases Gene3D G3DSA:2.60.120.200: no description |
Pfam PF07081: DUF1349 PIR superfamily PIRSF022704: Uncharacterised conserved protein, UCP022704 type |
| Ssh4p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
PANTHER PTHR12864:SF2: UNCHARACTERIZED PANTHER PTHR12864: RAN BINDING PROTEIN 9-RELATED Pfam PF00622: SPRY SMART SM00449: Domain in SPla and the RYanodine Receptor. |
| Uip5p | Gene3D G3DSA:2.60.120.200: no description SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
PANTHER PTHR12223:SF2: GB DEF: HYPOTHETICAL 51.0 KDA PROTEIN IN GAP1-NAP1 INTERGENIC REGION PANTHER PTHR12223: VESICULAR MANNOSE-BINDING LECTIN Pfam PF03388: Lectin_leg-like |
| Bre2p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
PANTHER PTHR10598: SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 SMART SM00449: Domain in SPla and the RYanodine Receptor. |
| Emp46p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases Gene3D G3DSA:2.60.120.200: no description |
PIR superfamily PIRSF018136: L-type lectin, yeast type PANTHER PTHR12223:SF1: GB DEF: S.CEREVISIAE CHROMOSOME XII READING FRAME ORF YLR080W (YLR080WP) PANTHER PTHR12223: VESICULAR MANNOSE-BINDING LECTIN Pfam PF03388: Lectin_leg-like |
| Crr1p | Gene3D G3DSA:2.60.120.200: no description SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
PRINTS PR00737: GLHYDRLASE16 PANTHER PTHR10963:SF14: BETA-GLUCANASE PANTHER PTHR10963: GLYCOSYL HYDROLASE-RELATED Pfam PF00722: Glyco_hydro_16 |
| Ear1p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases |
PANTHER PTHR12864:SF2: UNCHARACTERIZED PANTHER PTHR12864: RAN BINDING PROTEIN 9-RELATED SMART SM00449: Domain in SPla and the RYanodine Receptor. Pfam PF00622: SPRY |
| Kre6p | SUPERFAMILY SSF49899: Concanavalin A-like lectins/glucanases PANTHER PTHR31361:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31361: FAMILY NOT NAMED Pfam PF03935: SKN1 Gene3D G3DSA:2.60.120.200: no description |
none |
This table lists domains/motifs that are unique to Skn1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Skn1p domain/motif information see the external links section.
Last updated on 2013-05-06
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
| Predicted Transmembane Domain(s) (Click on image for expanded interactive view) | Amino Acid Coordinate(s) |
|---|---|
| 290 - 312 |
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Skn1p .
