VPS62/YGR141W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Vps62p domain/motif information see the external links section.

Proteome Browser

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Vps62p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Vps62p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Vps62p
Protein	Motifs in common with Vps62p	Other motifs in this protein (but not in Vps62p )
Prp42p	PANTHER PTHR17204: PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	PANTHER PTHR17204:SF4: YEAST PRE-MRNA PROCESSING-RELATED
Prp39p	PANTHER PTHR17204: PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	SMART SM00386: HAT (Half-A-TPR) repeats PANTHER PTHR17204:SF6: PRP39
Tda6p	PANTHER PTHR17204:SF7: PRE-MRNA PROCESSING-RELATED PANTHER PTHR17204: PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Vps62p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Vps62p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Vps62p
Database source	Accession number	Description
Pfam	PF06101	DUF946

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	13 - 34

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	1 - 31

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Vps62p .