SPT6/YGR116W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Spt6p domain/motif information see the external links section.

Proteome Browser
Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


Click on image for expanded interactive view
pbrowse

Shared domains/motifs
Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)


This table lists proteins that share domains/motifs in common with those found in Spt6p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Spt6p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no shared domains/motifs predicted for Spt6p .

Unique domains/motifs
Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)


This table lists domains/motifs that are unique to Spt6p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Spt6p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Spt6p
Database source Accession number Description
Gene3D G3DSA:1.10.150.310 no description
Gene3D G3DSA:1.10.3500.10 no description
Gene3D G3DSA:3.30.420.140 no description
Gene3D G3DSA:3.30.505.10 no description
PIR superfamily PIRSF036947 Transcription elongation factor Spt6
PANTHER PTHR10145 TRANSCRIPTION ELONGATION FACTOR SPT6
PANTHER PTHR10145:SF1 TRANSCRIPTION ELONGATION FACTOR SPT6
Pfam PF00017 SH2
SMART SM00252 Src homology
SMART SM00732 Likely ribonuclease with RNase H fold.
SUPERFAMILY SSF55550 SH2 domain

Transmembrane Domains
Jump to: top | Shared domains | Unique domains | Signal peptide(s)


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Spt6p .

Signal Peptide(s)
Jump to: top | Shared domains | Unique domains | Transmembrane domains


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Spt6p .

External Links
Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)


The following external links can be used to directly search external databases for domain/motif information for Spt6p .