RPL11B/YGR085C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpl11bp domain/motif information see the external links section.

Proteome Browser

Jump to: Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

Click on image for expanded interactive view

Shared domains/motifs

Jump to: top | Unique domains | Transmembrane domains | Signal peptide(s)

This table lists proteins that share domains/motifs in common with those found in Rpl11bp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl11bp domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl11bp
Protein	Motifs in common with Rpl11bp	Other motifs in this protein (but not in Rpl11bp )
Mrpl7p	SUPERFAMILY SSF55282: Ribosomal protein L5 Pfam PF00673: Ribosomal_L5_C Pfam PF00281: Ribosomal_L5 PANTHER PTHR11994: 60S RIBOSOMAL PROTEIN L11-RELATED Gene3D G3DSA:3.30.1440.10: no description	PANTHER PTHR11994:SF5: 60S RIBOSOMAL PROTEIN L7
Rpl11ap	SUPERFAMILY SSF55282: Ribosomal protein L5 Pfam PF00673: Ribosomal_L5_C Pfam PF00281: Ribosomal_L5 PIR superfamily PIRSF002161: Ribosomal protein, L5p/L5a/L11e/organellar L5 types Gene3D G3DSA:3.30.1440.10: no description PANTHER PTHR11994:SF2: 60S RIBOSOMAL PROTEIN L11 PANTHER PTHR11994: 60S RIBOSOMAL PROTEIN L11-RELATED	none

Unique domains/motifs

Jump to: top | Shared domains | Transmembrane domains | Signal peptide(s)

This table lists domains/motifs that are unique to Rpl11bp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl11bp domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rpl11bp .

Transmembrane Domains

Jump to: top | Shared domains | Unique domains | Signal peptide(s)

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpl11bp .

Signal Peptide(s)

Jump to: top | Shared domains | Unique domains | Transmembrane domains

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpl11bp .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rpl11bp .