SPT4/YGR063C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Spt4p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Spt4p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Spt4p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Spt4p
Protein	Motifs in common with Spt4p	Other motifs in this protein (but not in Spt4p )
Rpc10p	SUPERFAMILY SSF63393: RNA polymerase subunits	Gene3D G3DSA:2.20.28.30: no description PANTHER PTHR12056: DNA-DIRECTED RNA POLYMERASES I, II, AND III ProDom PD012151: RPC10_YEAST_P40422; Pfam PF03604: DNA_RNApol_7kD SMART SM00659: RNA polymerase subunit CX

Unique domains/motifs

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This table lists domains/motifs that are unique to Spt4p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Spt4p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Spt4p
Database source	Accession number	Description
PIR superfamily	PIRSF025023	Transcription elongation factor Spt4
PANTHER	PTHR12882	SUPPRESSOR OF TY 4
PANTHER	PTHR12882:SF0	SUBFAMILY NOT NAMED
Pfam	PF06093	Spt4

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Spt4p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Spt4p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Spt4p .