RSC1/YGR056W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rsc1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rsc1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rsc1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rsc1p
Protein	Motifs in common with Rsc1p	Other motifs in this protein (but not in Rsc1p )
Spt7p	SUPERFAMILY SSF47370: Bromodomain SMART SM00297: bromo domain Gene3D G3DSA:1.20.920.10: no description Pfam PF00439: Bromodomain PRINTS PR00503: BROMODOMAIN	PANTHER PTHR22880:SF33: BROMODOMAIN-CONTAINING PROTEIN PANTHER PTHR22880: FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
Bdf2p	PRINTS PR00503: BROMODOMAIN SUPERFAMILY SSF47370: Bromodomain Gene3D G3DSA:1.20.920.10: no description SMART SM00297: bromo domain Pfam PF00439: Bromodomain	PANTHER PTHR22880:SF32: BROMODOMAIN-CONTAINING PROTEIN PANTHER PTHR22880: FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
Snt2p	SMART SM00439: Bromo adjacent homology domain Pfam PF01426: BAH	SUPERFAMILY SSF57903: FYVE/PHD zinc finger SUPERFAMILY SSF46689: Homeodomain-like SUPERFAMILY SSF57783: Zinc beta-ribbon SMART SM00249: PHD zinc finger SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF00628: PHD Pfam PF13832: zf-HC5HC2H_2 Gene3D G3DSA:3.30.40.10: no description PANTHER PTHR13793:SF12: PHD FINGER PROTEIN PANTHER PTHR13793: PHD FINGER PROTEINS
Gcn5p	SUPERFAMILY SSF47370: Bromodomain PRINTS PR00503: BROMODOMAIN Gene3D G3DSA:1.20.920.10: no description Pfam PF00439: Bromodomain SMART SM00297: bromo domain	SUPERFAMILY SSF55729: Acyl-CoA N-acyltransferases (Nat) PANTHER PTHR22880:SF6: HISTONE ACETYLTRANSFERASE GCN5 PANTHER PTHR22880: FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS Gene3D G3DSA:3.40.630.30: no description Pfam PF13508: Acetyltransf_7
Yta7p	Gene3D G3DSA:1.20.920.10: no description SUPERFAMILY SSF47370: Bromodomain Pfam PF00439: Bromodomain	SMART SM00382: ATPases associated with a variety of cellula Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description PANTHER PTHR23069:SF0: SUBFAMILY NOT NAMED PANTHER PTHR23069: TAT-BINDING HOMOLOG 7 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF00004: AAA
Sth1p	SMART SM00297: bromo domain SUPERFAMILY SSF47370: Bromodomain Pfam PF00439: Bromodomain PRINTS PR00503: BROMODOMAIN Gene3D G3DSA:1.20.920.10: no description	SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF00176: SNF2_N Pfam PF00271: Helicase_C PANTHER PTHR10799:SF209: GLOBAL TRANSCRIPTION ACTIVATOR SNF2L2 (ATP-DEPENDENT HELICASE SMARCA2) PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Gene3D G3DSA:3.40.50.300: no description
Rsc4p	PRINTS PR00503: BROMODOMAIN Gene3D G3DSA:1.20.920.10: no description Pfam PF00439: Bromodomain SUPERFAMILY SSF47370: Bromodomain SMART SM00297: bromo domain PANTHER PTHR16062: SWI/SNF-RELATED	PANTHER PTHR16062:SF1: SUBFAMILY NOT NAMED
Rsc58p	Pfam PF00439: Bromodomain Gene3D G3DSA:1.20.920.10: no description	none
Rsc2p	PANTHER PTHR16062:SF3: SWI\/SNF RELATED PANTHER PTHR16062: SWI/SNF-RELATED PRINTS PR00503: BROMODOMAIN Pfam PF00439: Bromodomain Pfam PF01426: BAH SUPERFAMILY SSF47370: Bromodomain SMART SM00297: bromo domain SMART SM00439: Bromo adjacent homology domain Gene3D G3DSA:1.20.920.10: no description	none
Bdf1p	Pfam PF00439: Bromodomain PRINTS PR00503: BROMODOMAIN SUPERFAMILY SSF47370: Bromodomain Gene3D G3DSA:1.20.920.10: no description SMART SM00297: bromo domain	PANTHER PTHR22880:SF32: BROMODOMAIN-CONTAINING PROTEIN PANTHER PTHR22880: FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
Sir3p	SMART SM00439: Bromo adjacent homology domain Pfam PF01426: BAH	PANTHER PTHR10763:SF17: REGULATORY PROTEIN SIR3 PANTHER PTHR10763: CELL DIVISION CONTROL PROTEIN 6-RELATED SUPERFAMILY SSF82061: BAH domain
Orc1p	Pfam PF01426: BAH SMART SM00439: Bromo adjacent homology domain	SUPERFAMILY SSF82061: BAH domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description PANTHER PTHR10763:SF6: ORIGIN RECOGNITION COMPLEX SUBUNIT 1 PANTHER PTHR10763: CELL DIVISION CONTROL PROTEIN 6-RELATED Pfam PF00004: AAA SMART SM00382: ATPases associated with a variety of cellula
Snf2p	SMART SM00297: bromo domain Gene3D G3DSA:1.20.920.10: no description SUPERFAMILY SSF47370: Bromodomain Pfam PF00439: Bromodomain PRINTS PR00503: BROMODOMAIN	SMART SM00951: no description SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR10799:SF209: GLOBAL TRANSCRIPTION ACTIVATOR SNF2L2 (ATP-DEPENDENT HELICASE SMARCA2) PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Pfam PF00176: SNF2_N Pfam PF00271: Helicase_C Pfam PF08880: QLQ

Unique domains/motifs

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This table lists domains/motifs that are unique to Rsc1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rsc1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Rsc1p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rsc1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rsc1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rsc1p .