AMS1/YGL156W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ams1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Ams1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ams1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Ams1p
Protein	Motifs in common with Ams1p	Other motifs in this protein (but not in Ams1p )
Gal10p	SUPERFAMILY SSF74650: Galactose mutarotase-like	Gene3D G3DSA:3.40.50.720: no description Gene3D G3DSA:3.90.25.10: no description Gene3D G3DSA:2.70.98.10: no description TIGRFAMs TIGR01179: galE: UDP-glucose 4-epimerase GalE PANTHER PTHR10366:SF39: UDP-GLUCOSE 4-EPIMERASE PANTHER PTHR10366: NAD DEPENDENT EPIMERASE/DEHYDRATASE Pfam PF01263: Aldose_epim Pfam PF01370: Epimerase Pfam PF13950: Epimerase_Csub SUPERFAMILY SSF51735: NAD(P)-binding Rossmann-fold domains
Rot2p	SUPERFAMILY SSF74650: Galactose mutarotase-like	Pfam PF01055: Glyco_hydro_31 Pfam PF13802: Gal_mutarotas_2 PANTHER PTHR22762:SF7: NEUTRAL ALPHA-GLUCOSIDASE AB PRECURSOR (GLUCOSIDASE II ALPHA SUBUNIT) (ALPHA GLUCOSIDASE 2) PANTHER PTHR22762: ALPHA-GLUCOSIDASE SUPERFAMILY SSF51445: (Trans)glycosidases SUPERFAMILY SSF51011: Glycosyl hydrolase domain
Yhr210cp	SUPERFAMILY SSF74650: Galactose mutarotase-like	Gene3D G3DSA:2.70.98.10: no description PANTHER PTHR10091:SF0: ALDOSE 1-EPIMERASE PANTHER PTHR10091: ALDOSE-1-EPIMERASE Pfam PF01263: Aldose_epim
Cda1p	SUPERFAMILY SSF88713: Glycoside hydrolase/deacetylase	Pfam PF01522: Polysacc_deac_1 Gene3D G3DSA:3.20.20.370: no description PANTHER PTHR10587:SF15: SUBFAMILY NOT NAMED PANTHER PTHR10587: GLYCOSYL TRANSFERASE-RELATED
Cda2p	SUPERFAMILY SSF88713: Glycoside hydrolase/deacetylase	Gene3D G3DSA:3.20.20.370: no description PANTHER PTHR10587:SF15: SUBFAMILY NOT NAMED PANTHER PTHR10587: GLYCOSYL TRANSFERASE-RELATED Pfam PF01522: Polysacc_deac_1
Ymr099cp	SUPERFAMILY SSF74650: Galactose mutarotase-like	PANTHER PTHR11122:SF9: SUBFAMILY NOT NAMED PANTHER PTHR11122: APOSPORY-ASSOCIATED PROTEIN C-RELATED Gene3D G3DSA:2.70.98.10: no description Pfam PF01263: Aldose_epim
Ynr071cp	SUPERFAMILY SSF74650: Galactose mutarotase-like	PANTHER PTHR10091:SF0: ALDOSE 1-EPIMERASE PANTHER PTHR10091: ALDOSE-1-EPIMERASE Pfam PF01263: Aldose_epim Gene3D G3DSA:2.70.98.10: no description

Unique domains/motifs

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This table lists domains/motifs that are unique to Ams1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ams1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Ams1p
Database source	Accession number	Description
Gene3D	G3DSA:1.20.1270.50	no description
Gene3D	G3DSA:3.20.110.10	no description
PANTHER	PTHR11607	ALPHA-MANNOSIDASE
PANTHER	PTHR11607:SF2	ALPHA-MANNOSIDASE 2C1 (ALPHA-D-MANNOSIDE MANNOHYDROLASE)
Pfam	PF01074	Glyco_hydro_38
Pfam	PF07748	Glyco_hydro_38C
Pfam	PF09261	Alpha-mann_mid
SMART	SM00872	Alpha mannosidase, middle domain
SUPERFAMILY	SSF88688	Families 57/38 glycoside transferase middle domain

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Ams1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ams1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Ams1p .