RPL28/YGL103W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rpl28p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Rpl28p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl28p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rpl28p
Protein	Motifs in common with Rpl28p	Other motifs in this protein (but not in Rpl28p )
Mrpl10p	Gene3D G3DSA:3.100.10.10: no description Pfam PF00828: Ribosomal_L18e SUPERFAMILY SSF52080: Ribosomal proteins L15p and L18e	PANTHER PTHR12934:SF1: 60S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL PANTHER PTHR12934: 50S RIBOSOMAL PROTEIN L15 TIGRFAMs TIGR01071: rplO_bact: ribosomal protein L15
Rpl18bp	SUPERFAMILY SSF52080: Ribosomal proteins L15p and L18e Gene3D G3DSA:3.100.10.10: no description Pfam PF00828: Ribosomal_L18e	PANTHER PTHR10934: 60S RIBOSOMAL PROTEIN L18
Rpl18ap	SUPERFAMILY SSF52080: Ribosomal proteins L15p and L18e Gene3D G3DSA:3.100.10.10: no description Pfam PF00828: Ribosomal_L18e	PANTHER PTHR10934: 60S RIBOSOMAL PROTEIN L18

Unique domains/motifs

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This table lists domains/motifs that are unique to Rpl28p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rpl28p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rpl28p
Database source	Accession number	Description
PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Rpl28p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Rpl28p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Rpl28p .