This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Rim8p domain/motif information see the external links section.

Click on image for expanded interactive view

This table lists proteins that share domains/motifs in common with those found in Rim8p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rim8p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Rim8p
Protein	Motifs in common with Rim8p	Other motifs in this protein (but not in Rim8p )
Ecm21p	PANTHER PTHR11188: ARRESTIN DOMAIN CONTAINING PROTEIN Pfam PF02752: Arrestin_C SMART SM01017: Arrestin (or S-antigen), C-terminal domain	PANTHER PTHR11188:SF1: UNCHARACTERIZED
Spo23p	Pfam PF00339: Arrestin_N	none
Npc2p	SUPERFAMILY SSF81296: E set domains	SMART SM00737: Domain involved in innate immunity and lipid Pfam PF02221: E1_DerP2_DerF2 Gene3D G3DSA:2.70.220.10: no description
Rdi1p	SUPERFAMILY SSF81296: E set domains	PRINTS PR00492: RHOGDI PANTHER PTHR10980:SF3: RHO GDP-DISSOCIATION INHIBITOR PANTHER PTHR10980: RHO GDP-DISSOCIATION INHIBITOR Pfam PF02115: Rho_GDI Gene3D G3DSA:2.70.50.30: no description
Glc3p	SUPERFAMILY SSF81296: E set domains	SMART SM00642: Alpha-amylase domain SUPERFAMILY SSF51445: (Trans)glycosidases SUPERFAMILY SSF51011: Glycosyl hydrolase domain PANTHER PTHR10357:SF27: 1,4-ALPHA-GLUCAN-BRANCHING ENZYME (GLYCOGEN-BRANCHING ENZYME)(BRANCHER ENZYME) PANTHER PTHR10357: ALPHA-AMYLASE Gene3D G3DSA:2.60.40.10: no description Gene3D G3DSA:3.20.20.80: no description Gene3D G3DSA:2.60.40.1180: no description Pfam PF02806: Alpha-amylase_C Pfam PF00128: Alpha-amylase Pfam PF02922: CBM_48
Rog3p	PANTHER PTHR11188: ARRESTIN DOMAIN CONTAINING PROTEIN SMART SM01017: Arrestin (or S-antigen), C-terminal domain Pfam PF02752: Arrestin_C Pfam PF00339: Arrestin_N	PANTHER PTHR11188:SF1: UNCHARACTERIZED
Art5p	SMART SM01017: Arrestin (or S-antigen), C-terminal domain Pfam PF02752: Arrestin_C PANTHER PTHR11188: ARRESTIN DOMAIN CONTAINING PROTEIN	PANTHER PTHR11188:SF1: UNCHARACTERIZED
Mga2p	SUPERFAMILY SSF81296: E set domains	SMART SM00429: ig-like, plexins, transcription factors SMART SM00248: ankyrin repeats SUPERFAMILY SSF48403: Ankyrin repeat Gene3D G3DSA:2.60.40.10: no description Gene3D G3DSA:1.25.40.20: no description PANTHER PTHR24189: FAMILY NOT NAMED Pfam PF12796: Ank_2 Pfam PF01833: TIG
Aly2p	SMART SM01017: Arrestin (or S-antigen), C-terminal domain Pfam PF02752: Arrestin_C Pfam PF00339: Arrestin_N PANTHER PTHR11188: ARRESTIN DOMAIN CONTAINING PROTEIN SUPERFAMILY SSF81296: E set domains	PANTHER PTHR11188:SF1: UNCHARACTERIZED
Spt23p	SUPERFAMILY SSF81296: E set domains	Pfam PF12796: Ank_2 Pfam PF01833: TIG PANTHER PTHR24198: ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN Gene3D G3DSA:2.60.40.10: no description Gene3D G3DSA:1.25.40.20: no description SMART SM00429: ig-like, plexins, transcription factors SMART SM00248: ankyrin repeats SUPERFAMILY SSF48403: Ankyrin repeat
Aly1p	PANTHER PTHR11188: ARRESTIN DOMAIN CONTAINING PROTEIN Pfam PF02752: Arrestin_C SMART SM01017: Arrestin (or S-antigen), C-terminal domain	PANTHER PTHR11188:SF1: UNCHARACTERIZED
Rod1p	Pfam PF02752: Arrestin_C Pfam PF00339: Arrestin_N PANTHER PTHR11188: ARRESTIN DOMAIN CONTAINING PROTEIN SMART SM01017: Arrestin (or S-antigen), C-terminal domain	PANTHER PTHR11188:SF1: UNCHARACTERIZED
Csr2p	SMART SM01017: Arrestin (or S-antigen), C-terminal domain Pfam PF02752: Arrestin_C	none

This table lists domains/motifs that are unique to Rim8p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Rim8p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Rim8p
Database source	Accession number	Description
PANTHER	PTHR11188:SF33	PROTEIN F15A4.9, PARTIALLY CONFIRMED BY TRANSCRIPT EVIDENCE

This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

The following external links can be used to directly search external databases for domain/motif information for Rim8p .