YRA1/YDR381W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Yra1p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Yra1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yra1p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Yra1p
Protein Motifs in common with Yra1p Other motifs in this protein (but not in Yra1p )
Pin4p Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF14259: RRM_6
PANTHER PTHR24011:SF54: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
Mud1p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF14259: RRM_6
PANTHER PTHR10501:SF4: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
PANTHER PTHR10501: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
Ngr1p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SMART SM00360: RNA recognition motif
PANTHER PTHR24012:SF55: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Gbp2p Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
PANTHER PTHR23003:SF1: GB DEF: HRB1 PROTEIN (TOM34 PROTEIN)
PANTHER PTHR23003: RNA RECOGNITION MOTIF (RRM) DOMAIN CONTAINING PROTEIN
Lhp1p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain
PRINTS PR00302: LUPUSLA
Gene3D G3DSA:1.10.10.10: no description
PANTHER PTHR22792:SF2: LUPUS LA PROTEIN (LA RIBONUCLEOPROTEIN)
PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED
Pfam PF05383: La
SMART SM00715: Domain in the RNA-binding Lupus La protein;
Asm4p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF05172: Nup35_RRM
Nrp1p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:4.10.1060.10: no description
SMART SM00547: Zinc finger domain
PANTHER PTHR23111:SF4: GB DEF: ASPARAGINE-RICH PROTEIN (ARP PROTEIN)
PANTHER PTHR23111: ZINC FINGER PROTEIN
SUPERFAMILY SSF90209: Ran BP2/NZF zinc finger-like
Pfam PF00641: zf-RanBP
Cwc2p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF00076: RRM_1
PANTHER PTHR14089:SF2: CELL CYCLE CONTROL PROTEIN CWF2
PANTHER PTHR14089: CELL CYCLE CONTROL PROTEIN
Nop6p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
none
Whi4p Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR24622:SF47: SUBFAMILY NOT NAMED
PANTHER PTHR24622: FAMILY NOT NAMED
Tif35p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF00076: RRM_1
PIR superfamily PIRSF037949: Translation initiation factor 3, RNA-binding subunit
Pfam PF12353: eIF3g
PANTHER PTHR10352: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
Npl3p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
PANTHER PTHR24012:SF122: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Mot2p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF57850: RING/U-box
PANTHER PTHR12603:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR12603: CCR4-NOT TRANSCRIPTION COMPLEX RELATED
Gene3D G3DSA:3.30.40.10: no description
SMART SM00361: RNA recognition motif
Pfam PF14570: zf-RING_4
Pfam PF13893: RRM_5
Rps24ap Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54189: Ribosomal proteins S24e, L23 and L15e
PANTHER PTHR10496: 40S RIBOSOMAL PROTEIN S24
Pfam PF01282: Ribosomal_S24e
ProDom PD006052: RS24_YEAST_P26782;
Pab1p SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SMART SM00517: C-terminal domain of Poly(A)-binding protein
PANTHER PTHR24011:SF45: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
SUPERFAMILY SSF63570: PABC (PABP) domain
TIGRFAMs TIGR01628: PABP-1234: polyadenylate binding protein, human ty
Gene3D G3DSA:1.10.1900.10: no description
Pfam PF00658: PABP
Pes4p Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF13893: RRM_5
PANTHER PTHR24012:SF44: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
SMART SM00361: RNA recognition motif
Rrt5p SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
Pfam PF14259: RRM_6
PANTHER PTHR24622:SF46: SUBFAMILY NOT NAMED
PANTHER PTHR24622: FAMILY NOT NAMED
Rna15p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR23139: RNA-BINDING PROTEIN
Pfam PF14304: CSTF_C
Upf3p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF03467: Smg4_UPF3
PANTHER PTHR13112: UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN
Pti1p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
Pfam PF14327: CSTF2_hinge
Nsr1p SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR24012:SF8: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Pet54p SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00361: RNA recognition motif
Ygr250cp SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR23139:SF7: GB DEF: HYPOTHETICAL 89.5 KDA PROTEIN IN MGA1-GCN4 INTERGENIC REGION
PANTHER PTHR23139: RNA-BINDING PROTEIN
Pfam PF14259: RRM_6
Rim4p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
PANTHER PTHR24011:SF102: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
SMART SM00361: RNA recognition motif
Sbp1p Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF14259: RRM_6
PANTHER PTHR24012:SF121: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Mip6p SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
PANTHER PTHR24012:SF44: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Pfam PF13893: RRM_5
Nam8p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR24012:SF56: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Yhr127wp SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
none
Snp1p Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF12220: U1snRNP70_N
PANTHER PTHR13952: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD
Rps24bp Gene3D G3DSA:3.30.70.330: no description
Pfam PF01282: Ribosomal_S24e
ProDom PD006052: RS24_YEAST_P26782;
SUPERFAMILY SSF54189: Ribosomal proteins S24e, L23 and L15e
PANTHER PTHR10496: 40S RIBOSOMAL PROTEIN S24
Sgn1p SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
PANTHER PTHR23365: POLY-A BINDING PROTEIN 2
Ist3p SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR23139: RNA-BINDING PROTEIN
Msl1p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
PANTHER PTHR10501:SF6: SUBFAMILY NOT NAMED
PANTHER PTHR10501: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B
Pfam PF13893: RRM_5
Jsn1p Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00806: PUF
SUPERFAMILY SSF48371: ARM repeat
SMART SM00025: Pumilio-like repeats
PANTHER PTHR12537:SF18: JSN1 PROTEIN (PUF1 PROTEIN)
PANTHER PTHR12537: RNA BINDING PROTEIN PUMILIO-RELATED
Gene3D G3DSA:1.25.10.10: no description
Mud2p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00361: RNA recognition motif
PANTHER PTHR23139:SF9: SPLICING FACTOR U2AF LARGE SUBUNIT
PANTHER PTHR23139: RNA-BINDING PROTEIN
Yra2p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
PANTHER PTHR24622:SF46: SUBFAMILY NOT NAMED
PANTHER PTHR24622: FAMILY NOT NAMED
Rnp1p Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF14259: RRM_6
PANTHER PTHR24622:SF85: SUBFAMILY NOT NAMED
PANTHER PTHR24622: FAMILY NOT NAMED
Nab6p Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR14089:SF7: PROTEIN C33G3.6, CONFIRMED BY TRANSCRIPT EVIDENCE
PANTHER PTHR14089: CELL CYCLE CONTROL PROTEIN
Pfam PF10567: Nab6_mRNP_bdg
Pfam PF10378: RRM
Pfam PF14259: RRM_6
Nup53p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF05172: Nup35_RRM
Prp24p Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR24011:SF5: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
Pfam PF05391: Lsm_interact
Yme2p Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF10443: RNA12
PANTHER PTHR32198:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR32198: FAMILY NOT NAMED
Hrb1p SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR23003:SF1: GB DEF: HRB1 PROTEIN (TOM34 PROTEIN)
PANTHER PTHR23003: RNA RECOGNITION MOTIF (RRM) DOMAIN CONTAINING PROTEIN
Pub1p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
SMART SM00361: RNA recognition motif
PANTHER PTHR24622:SF45: RNA-BINDING PROTEIN 28 (RNA-BINDING MOTIF PROTEIN 28) SOURCE:UNIPROTKB/SWISS-PR
PANTHER PTHR24622: FAMILY NOT NAMED
Nop15p SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR23365: POLY-A BINDING PROTEIN 2
Nop13p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF00076: RRM_1
SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF14259: RRM_6
PANTHER PTHR24012:SF4: DNA-BINDING PROTEIN MODULO
PANTHER PTHR24012: FAMILY NOT NAMED
Whi3p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR24622:SF47: SUBFAMILY NOT NAMED
PANTHER PTHR24622: FAMILY NOT NAMED
Nrd1p SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF48464: ENTH/VHS domain
SMART SM00582: no description
PANTHER PTHR24011:SF73: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
Gene3D G3DSA:1.25.40.90: no description
Cus2p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
PANTHER PTHR15608: SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2
Pfam PF14259: RRM_6
Esf2p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR12311:SF10: SUBFAMILY NOT NAMED
PANTHER PTHR12311: FAMILY NOT NAMED
Nop12p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
PANTHER PTHR24011:SF6: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
Hrp1p Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
PANTHER PTHR24012:SF10: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Rpl25p Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR11620: 60S RIBOSOMAL PROTEIN L23A
SUPERFAMILY SSF54189: Ribosomal proteins S24e, L23 and L15e
Pfam PF00276: Ribosomal_L23
Pfam PF03939: Ribosomal_L23eN
Nop8p Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF13893: RRM_5
PANTHER PTHR24011:SF101: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
Hsh49p SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
PANTHER PTHR24011:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR24011: FAMILY NOT NAMED
Prt1p Pfam PF00076: RRM_1
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
PIR superfamily PIRSF036424: Translation initiation factor eIF-3b
Pfam PF08662: eIF2A
SUPERFAMILY SSF82171: DPP6 N-terminal domain-like
PANTHER PTHR14068:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR14068: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (EIF3)-RELATED
Gene3D G3DSA:2.120.10.30: no description
Nop4p Pfam PF00076: RRM_1
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Pfam PF14259: RRM_6
PANTHER PTHR24012:SF118: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Cbc2p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR18847: 20 KD NUCLEAR CAP BINDING PROTEIN
Pfam PF14259: RRM_6
Mrn1p SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR14089:SF7: PROTEIN C33G3.6, CONFIRMED BY TRANSCRIPT EVIDENCE
PANTHER PTHR14089: CELL CYCLE CONTROL PROTEIN
Pfam PF14259: RRM_6
Pfam PF13893: RRM_5
Nab3p Pfam PF00076: RRM_1
SMART SM00360: RNA recognition motif
SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SUPERFAMILY SSF52954: Class II aaRS ABD-related
Gene3D G3DSA:3.40.50.800: no description
PANTHER PTHR13968:SF15: AFL070CP
PANTHER PTHR13968: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN
Puf2p Pfam PF00076: RRM_1
SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00806: PUF
SUPERFAMILY SSF48371: ARM repeat
PANTHER PTHR12537:SF18: JSN1 PROTEIN (PUF1 PROTEIN)
PANTHER PTHR12537: RNA BINDING PROTEIN PUMILIO-RELATED
SMART SM00025: Pumilio-like repeats
Gene3D G3DSA:1.25.10.10: no description
Mrd1p SUPERFAMILY SSF54928: RNA-binding domain, RBD
SMART SM00360: RNA recognition motif
Gene3D G3DSA:3.30.70.330: no description
Pfam PF00076: RRM_1
PANTHER PTHR24012:SF78: SUBFAMILY NOT NAMED
PANTHER PTHR24012: FAMILY NOT NAMED
Pfam PF14259: RRM_6
Tif3p SUPERFAMILY SSF54928: RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330: no description
SMART SM00360: RNA recognition motif
PANTHER PTHR23236:SF6: SUBFAMILY NOT NAMED
PANTHER PTHR23236: EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
Pfam PF14259: RRM_6

Unique domains/motifs


This table lists domains/motifs that are unique to Yra1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yra1p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Yra1p
Database source Accession number Description
PANTHER PTHR19965 RNA AND EXPORT FACTOR BINDING PROTEIN

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Yra1p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Yra1p .


The following external links can be used to directly search external databases for domain/motif information for Yra1p .