PRP42/YDR235W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Prp42p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Prp42p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Prp42p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Prp42p
Protein	Motifs in common with Prp42p	Other motifs in this protein (but not in Prp42p )
Vps62p	PANTHER PTHR17204: PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	PANTHER PTHR17204:SF7: PRE-MRNA PROCESSING-RELATED Pfam PF06101: DUF946
Prp39p	PANTHER PTHR17204: PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	SMART SM00386: HAT (Half-A-TPR) repeats PANTHER PTHR17204:SF6: PRP39
Tda6p	PANTHER PTHR17204: PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	PANTHER PTHR17204:SF7: PRE-MRNA PROCESSING-RELATED

Unique domains/motifs

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This table lists domains/motifs that are unique to Prp42p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Prp42p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Prp42p
Database source	Accession number	Description
PANTHER	PTHR17204:SF4	YEAST PRE-MRNA PROCESSING-RELATED

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Prp42p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Prp42p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Prp42p .