MSC2/YDR205W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Msc2p domain/motif information see the external links section.

Proteome Browser

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Msc2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Msc2p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Msc2p
Protein	Motifs in common with Msc2p	Other motifs in this protein (but not in Msc2p )
Mmt1p	Gene3D G3DSA:1.20.1510.10: no description PANTHER PTHR11562: CATION EFFLUX PROTEIN/ ZINC TRANSPORTER TIGRFAMs TIGR01297: CDF: cation diffusion facilitator family transport Pfam PF01545: Cation_efflux	PANTHER PTHR11562:SF10: SUBFAMILY NOT NAMED
Zrc1p	PANTHER PTHR11562: CATION EFFLUX PROTEIN/ ZINC TRANSPORTER Gene3D G3DSA:1.20.1510.10: no description TIGRFAMs TIGR01297: CDF: cation diffusion facilitator family transport Pfam PF01545: Cation_efflux	PANTHER PTHR11562:SF10: SUBFAMILY NOT NAMED
Zrg17p	Pfam PF01545: Cation_efflux	none
Cot1p	Pfam PF01545: Cation_efflux PANTHER PTHR11562: CATION EFFLUX PROTEIN/ ZINC TRANSPORTER TIGRFAMs TIGR01297: CDF: cation diffusion facilitator family transport Gene3D G3DSA:1.20.1510.10: no description	PANTHER PTHR11562:SF10: SUBFAMILY NOT NAMED
Mmt2p	PANTHER PTHR11562: CATION EFFLUX PROTEIN/ ZINC TRANSPORTER Pfam PF01545: Cation_efflux TIGRFAMs TIGR01297: CDF: cation diffusion facilitator family transport Gene3D G3DSA:1.20.1510.10: no description	PANTHER PTHR11562:SF10: SUBFAMILY NOT NAMED

Unique domains/motifs

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This table lists domains/motifs that are unique to Msc2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Msc2p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Msc2p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

Predicted Transmembane Domain(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	57 - 79
	91 - 113
	133 - 155
	175 - 197
	219 - 241
	248 - 265
	297 - 319
	388 - 405
	420 - 437
	450 - 472
	492 - 514
	527 - 549
	564 - 586

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

Predicted Signal Peptide(s) (Click on image for expanded interactive view)	Amino Acid Coordinate(s)

	1 - 22

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Msc2p .