PDC2/YDR081C Domains/Motifs and Signal Peptides 
To directly search external databases for Pdc2p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Pdc2p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Pdc2p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Pdc2p | ||
|---|---|---|
| Protein | Motifs in common with Pdc2p | Other motifs in this protein (but not in Pdc2p ) |
| Fun19p | SUPERFAMILY SSF46689: Homeodomain-like |
PANTHER PTHR12374: TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED Pfam PF04433: SWIRM |
| Tod6p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF13921: Myb_DNA-bind_6 |
| Reb1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF13921: Myb_DNA-bind_6 SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin PANTHER PTHR10641:SF193: SUBFAMILY NOT NAMED PANTHER PTHR10641: MYB-LIKE DNA-BINDING PROTEIN MYB |
| Pyc2p | Gene3D G3DSA:1.10.10.60: no description |
SUPERFAMILY SSF51569: Aldolase SUPERFAMILY SSF56059: Glutathione synthetase ATP-binding domain-like SUPERFAMILY SSF89000: post-HMGL domain-like SUPERFAMILY SSF52440: PreATP-grasp domain SUPERFAMILY SSF51246: Rudiment single hybrid motif SUPERFAMILY SSF51230: Single hybrid motif Pfam PF02786: CPSase_L_D2 Pfam PF02436: PYC_OADA Pfam PF00289: CPSase_L_chain Pfam PF02785: Biotin_carb_C Pfam PF00682: HMGL-like Pfam PF00364: Biotin_lipoyl Gene3D G3DSA:3.40.50.20: no description Gene3D G3DSA:3.30.1490.20: no description Gene3D G3DSA:3.30.470.20: no description Gene3D G3DSA:3.20.20.70: no description Gene3D G3DSA:3.10.600.10: no description Gene3D G3DSA:2.40.50.100: no description PIR superfamily PIRSF001594: Pyruvate carboxylase PANTHER PTHR18866:SF10: PYRUVATE CARBOXYLASE PANTHER PTHR18866: CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE SMART SM00878: Biotin carboxylase C-terminal domain TIGRFAMs TIGR01235: pyruv_carbox: pyruvate carboxylase |
| Isw1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
PANTHER PTHR10799:SF73: ISWI CHROMATIN-REMODELING COMPLEX ATPASE ISW1 PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF101224: HAND domain of the nucleosome remodeling ATPase ISWI Gene3D G3DSA:3.40.50.300: no description Pfam PF00176: SNF2_N Pfam PF09111: SLIDE Pfam PF09110: HAND Pfam PF00271: Helicase_C SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin |
| Hmlalpha2p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
SMART SM00389: Homeodomain Pfam PF00046: Homeobox |
| Snt1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF00249: Myb_DNA-binding Pfam PF03990: DUF348 PANTHER PTHR22795:SF11: UNCHARACTERIZED PANTHER PTHR22795: SUPPRESSOR OF RNA POLYMERASE B SRB8-RELATED |
| Matalpha2p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF00046: Homeobox SMART SM00389: Homeodomain |
| Hmra2p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
SMART SM00389: Homeodomain Pfam PF00046: Homeobox |
| Hmra1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
SMART SM00389: Homeodomain PANTHER PTHR24325: FAMILY NOT NAMED Pfam PF00046: Homeobox Gene3D G3DSA:3.40.50.10760: no description |
| Pho2p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
Pfam PF00046: Homeobox PANTHER PTHR24326:SF62: SUBFAMILY NOT NAMED PANTHER PTHR24326: FAMILY NOT NAMED SMART SM00389: Homeodomain |
| Nsi1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
PANTHER PTHR10641:SF193: SUBFAMILY NOT NAMED PANTHER PTHR10641: MYB-LIKE DNA-BINDING PROTEIN MYB SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF13921: Myb_DNA-bind_6 |
| Eaf1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF07529: HSA Pfam PF13921: Myb_DNA-bind_6 SMART SM00573: domain in helicases and associated with SANT SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin |
| Ada2p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
SMART SM00291: Zinc-binding domain, present in Dystrophin, SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin PIR superfamily PIRSF025024: Transcriptional adaptor 2 PANTHER PTHR12374:SF1: TRANSCRIPTIONAL ADAPTOR 2 (ADA2) PANTHER PTHR12374: TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED Pfam PF00569: ZZ Pfam PF04433: SWIRM Pfam PF00249: Myb_DNA-binding |
| Yhp1p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
Pfam PF00046: Homeobox SMART SM00389: Homeodomain |
| Dot6p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF13921: Myb_DNA-bind_6 SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin |
| Chd1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
PANTHER PTHR10799:SF70: CHROMODOMAIN HELICASE DNA BINDING PROTEIN PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED SMART SM00298: Chromatin organization modifier domain SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain Pfam PF00176: SNF2_N Pfam PF13907: DUF4208 Pfam PF00385: Chromo Pfam PF00271: Helicase_C SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF54160: Chromo domain-like Gene3D G3DSA:2.40.50.40: no description Gene3D G3DSA:3.40.50.300: no description |
| Rsc8p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
Gene3D G3DSA:1.10.10.10: no description Pfam PF04433: SWIRM Pfam PF00569: ZZ Pfam PF00249: Myb_DNA-binding PANTHER PTHR12802:SF6: CHROMATIN STRUCTURE REMODELING COMPLEX PROTEIN PANTHER PTHR12802: SWI/SNF COMPLEX-RELATED SMART SM00291: Zinc-binding domain, present in Dystrophin, SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin |
| Pyc1p | Gene3D G3DSA:1.10.10.60: no description |
PANTHER PTHR18866:SF10: PYRUVATE CARBOXYLASE PANTHER PTHR18866: CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE SMART SM00878: Biotin carboxylase C-terminal domain Gene3D G3DSA:3.40.50.20: no description Gene3D G3DSA:3.30.1490.20: no description Gene3D G3DSA:3.30.470.20: no description Gene3D G3DSA:3.20.20.70: no description Gene3D G3DSA:3.10.600.10: no description Gene3D G3DSA:2.40.50.100: no description PIR superfamily PIRSF001594: Pyruvate carboxylase TIGRFAMs TIGR01235: pyruv_carbox: pyruvate carboxylase Pfam PF02786: CPSase_L_D2 Pfam PF02436: PYC_OADA Pfam PF00289: CPSase_L_chain Pfam PF02785: Biotin_carb_C Pfam PF00682: HMGL-like Pfam PF00364: Biotin_lipoyl SUPERFAMILY SSF51569: Aldolase SUPERFAMILY SSF56059: Glutathione synthetase ATP-binding domain-like SUPERFAMILY SSF89000: post-HMGL domain-like SUPERFAMILY SSF52440: PreATP-grasp domain SUPERFAMILY SSF51246: Rudiment single hybrid motif SUPERFAMILY SSF51230: Single hybrid motif |
| Tos8p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
Pfam PF05920: Homeobox_KN SMART SM00389: Homeodomain PANTHER PTHR11850: HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Snt2p | SUPERFAMILY SSF46689: Homeodomain-like |
SUPERFAMILY SSF57903: FYVE/PHD zinc finger SUPERFAMILY SSF57783: Zinc beta-ribbon SMART SM00439: Bromo adjacent homology domain SMART SM00249: PHD zinc finger SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF01426: BAH Pfam PF00628: PHD Pfam PF13832: zf-HC5HC2H_2 Gene3D G3DSA:3.30.40.10: no description PANTHER PTHR13793:SF12: PHD FINGER PROTEIN PANTHER PTHR13793: PHD FINGER PROTEINS |
| Swc4p | SUPERFAMILY SSF46689: Homeodomain-like |
PANTHER PTHR12855:SF2: GB DEF: HYPOTHETICAL 55.2 KDA PROTEIN IN ERP6-TFG2 INTERGENIC REGION PANTHER PTHR12855: FAMILY NOT NAMED SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin |
| Swi3p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
Pfam PF04433: SWIRM Pfam PF00249: Myb_DNA-binding SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR12802:SF5: SWI/SNF COMPLEX COMPONENT SWI3 PANTHER PTHR12802: SWI/SNF COMPLEX-RELATED |
| Bas1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF13921: Myb_DNA-bind_6 Pfam PF00249: Myb_DNA-binding SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin PANTHER PTHR10641:SF167: SUBFAMILY NOT NAMED PANTHER PTHR10641: MYB-LIKE DNA-BINDING PROTEIN MYB |
| Yox1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF00046: Homeobox SMART SM00389: Homeodomain |
| Cef1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin PANTHER PTHR10641:SF17: CELL DIVISION CYCLE 5-LIKE PROTEIN PANTHER PTHR10641: MYB-LIKE DNA-BINDING PROTEIN MYB Pfam PF13921: Myb_DNA-bind_6 |
| Tri1p | Gene3D G3DSA:1.10.10.60: no description |
Pfam PF02201: SWIB Pfam PF08766: DEK_C PANTHER PTHR13844:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13844: BRG-1 ASSOCIATED FACTOR 60 (BAF60) SMART SM00151: SWI complex, BAF60b domains SUPERFAMILY SSF47592: SWIB/MDM2 domain Gene3D G3DSA:1.10.245.10: no description |
| Bdp1p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin PIR superfamily PIRSF037327: Transcription factor IIIB, Bdp1 subunit, fungal type Pfam PF00249: Myb_DNA-binding PANTHER PTHR22929:SF0: SUBFAMILY NOT NAMED PANTHER PTHR22929: RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B |
| Rap1p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
SUPERFAMILY SSF52113: BRCT domain Pfam PF11626: Rap1_C Pfam PF09197: Rap1-DNA-bind Pfam PF00249: Myb_DNA-binding SMART SM00292: breast cancer carboxy-terminal domain SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Gene3D G3DSA:3.40.50.10190: no description |
| Rpb10p | Gene3D G3DSA:1.10.10.60: no description |
ProDom PD006539: RPB10_YEAST_P22139; PIR superfamily PIRSF005653: DNA-directed RNA polymerase II, RPB10/RpoN subunit type SUPERFAMILY SSF46924: RNA polymerase subunit RPB10 Pfam PF01194: RNA_pol_N PANTHER PTHR23413: 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N |
| Uaf30p | Gene3D G3DSA:1.10.10.60: no description |
SMART SM00151: SWI complex, BAF60b domains PANTHER PTHR13844:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13844: BRG-1 ASSOCIATED FACTOR 60 (BAF60) Pfam PF02201: SWIB Pfam PF08766: DEK_C SUPERFAMILY SSF47592: SWIB/MDM2 domain Gene3D G3DSA:1.10.245.10: no description |
| Isw2p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
Pfam PF00176: SNF2_N Pfam PF09111: SLIDE Pfam PF09110: HAND Pfam PF00271: Helicase_C SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF101224: HAND domain of the nucleosome remodeling ATPase ISWI PANTHER PTHR10799:SF73: ISWI CHROMATIN-REMODELING COMPLEX ATPASE ISW1 PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Gene3D G3DSA:3.40.50.300: no description |
| Yor338wp | SUPERFAMILY SSF46689: Homeodomain-like |
Pfam PF04433: SWIRM PANTHER PTHR12374: TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED |
| Tbf1p | Gene3D G3DSA:1.10.10.60: no description SUPERFAMILY SSF46689: Homeodomain-like |
SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF08558: TRF Pfam PF00249: Myb_DNA-binding PANTHER PTHR32197:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32197: FAMILY NOT NAMED |
| Cup9p | SUPERFAMILY SSF46689: Homeodomain-like Gene3D G3DSA:1.10.10.60: no description |
PANTHER PTHR11850:SF31: HOMEOBOX PROTEIN CUP9 PANTHER PTHR11850: HOMEOBOX PROTEIN TRANSCRIPTION FACTORS SMART SM00389: Homeodomain Pfam PF05920: Homeobox_KN |
This table lists domains/motifs that are unique to Pdc2p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Pdc2p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Pdc2p | ||
|---|---|---|
| Database source | Accession number | Description |
| PANTHER | PTHR19303 | TRANSPOSON |
| PANTHER | PTHR19303:SF9 | PDC2 PROTEIN |
| Pfam | PF03184 | DDE_1 |
| Pfam | PF03221 | HTH_Tnp_Tc5 |
| SMART | SM00674 | Putative DNA-binding domain in centromere pr |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Pdc2p .
