CDC13/YDL220C Domains/Motifs and Signal Peptides 
To directly search external databases for Cdc13p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Cdc13p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Cdc13p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Cdc13p | ||
|---|---|---|
| Protein | Motifs in common with Cdc13p | Other motifs in this protein (but not in Cdc13p ) |
| Rfa1p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PANTHER PTHR23273: REPLICATION FACTOR A 1, RFA1 TIGRFAMs TIGR00617: rpa1: replication factor-a protein 1 (rpa1) Pfam PF08646: Rep_fac-A_C Pfam PF01336: tRNA_anti Pfam PF04057: Rep-A_N |
| Mcm2p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PANTHER PTHR11630:SF44: DNA REPLICATION LICENSING FACTOR MCM2 PANTHER PTHR11630: DNA REPLICATION LICENSING FACTOR PRINTS PR01657: MCMFAMILY PRINTS PR01658: MCMPROTEIN2 Pfam PF00493: MCM Pfam PF12619: MCM2_N Gene3D G3DSA:3.30.1640.10: no description Gene3D G3DSA:3.40.50.300: no description SMART SM00350: minichromosome maintenance proteins SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases |
| Rps11bp | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PRINTS PR00973: RIBOSOMALS17 ProDom PD001295: RS11_YEAST_P26781; TIGRFAMs TIGR03630: arch_S17P: archaeal ribosomal protein S17P PANTHER PTHR10744:SF2: 40S RIBOSOMAL PROTEIN S11 PANTHER PTHR10744: 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Pfam PF00366: Ribosomal_S17 |
| Mcm7p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR11630:SF26: DNA REPLICATION LICENSING FACTOR MCM7 PANTHER PTHR11630: DNA REPLICATION LICENSING FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PRINTS PR01657: MCMFAMILY PRINTS PR01663: MCMPROTEIN7 Pfam PF00493: MCM SMART SM00350: minichromosome maintenance proteins SMART SM00382: ATPases associated with a variety of cellula Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.300: no description |
| Slm5p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
TIGRFAMs TIGR00457: asnS: asparagine--tRNA ligase PANTHER PTHR22594:SF6: ASPARTYL-TRNA SYNTHETASE PANTHER PTHR22594: ASPARTYL/LYSYL-TRNA SYNTHETASE Pfam PF00152: tRNA-synt_2 Pfam PF01336: tRNA_anti Gene3D G3DSA:3.30.930.10: no description PRINTS PR01042: TRNASYNTHASP SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases |
| Rim1p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR10302: SINGLE-STRANDED DNA-BINDING PROTEIN Pfam PF00436: SSB |
| Cdc9p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR10459:SF10: DNA LIGASE I PANTHER PTHR10459: DNA LIGASE TIGRFAMs TIGR00574: dnl1: DNA ligase I, ATP-dependent (dnl1) Pfam PF01068: DNA_ligase_A_M Pfam PF04675: DNA_ligase_A_N Pfam PF04679: DNA_ligase_A_C SUPERFAMILY SSF117018: ATP-dependent DNA ligase DNA-binding domain SUPERFAMILY SSF56091: DNA ligase/mRNA capping enzyme, catalytic domain Gene3D G3DSA:1.10.3260.10: no description Gene3D G3DSA:3.30.1490.70: no description Gene3D G3DSA:3.30.470.30: no description |
| Rps11ap | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
ProDom PD001295: RS11_YEAST_P26781; PRINTS PR00973: RIBOSOMALS17 PANTHER PTHR10744:SF2: 40S RIBOSOMAL PROTEIN S11 PANTHER PTHR10744: 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Pfam PF00366: Ribosomal_S17 TIGRFAMs TIGR03630: arch_S17P: archaeal ribosomal protein S17P |
| Krs1p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Gene3D G3DSA:3.30.930.10: no description Pfam PF00152: tRNA-synt_2 Pfam PF01336: tRNA_anti TIGRFAMs TIGR00499: lysS_bact: lysine--tRNA ligase SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases PRINTS PR00982: TRNASYNTHLYS PANTHER PTHR22594:SF4: LYSYL-TRNA SYNTHETASE PANTHER PTHR22594: ASPARTYL/LYSYL-TRNA SYNTHETASE |
| Rvb1p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00382: ATPases associated with a variety of cellula Pfam PF06068: TIP49 PANTHER PTHR11093:SF3: SUBFAMILY NOT NAMED PANTHER PTHR11093: RUVB-RELATED REPTIN AND PONTIN Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description |
| Rpb7p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
SMART SM00316: Ribosomal protein S1-like RNA-binding domain Gene3D G3DSA:3.30.1490.120: no description Pfam PF03876: SHS2_Rpb7-N Pfam PF00575: S1 SUPERFAMILY SSF88798: N-terminal, heterodimerisation domain of RBP7 (RpoE) PANTHER PTHR12709: DNA-DIRECTED RNA POLYMERASE II, III |
| Mcm3p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Pfam PF00493: MCM PRINTS PR01657: MCMFAMILY PRINTS PR01659: MCMPROTEIN3 Gene3D G3DSA:3.40.50.300: no description SMART SM00350: minichromosome maintenance proteins SMART SM00382: ATPases associated with a variety of cellula PANTHER PTHR11630:SF46: DNA REPLICATION LICENSING FACTOR MCM3 PANTHER PTHR11630: DNA REPLICATION LICENSING FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases |
| Hyp2p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Gene3D G3DSA:2.30.30.30: no description TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A Pfam PF01287: eIF-5a Pfam PF00467: KOW PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED SUPERFAMILY SSF50104: Translation proteins SH3-like domain PIR superfamily PIRSF003025: Translation initiation factor eIF-5A |
| Rml2p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 PANTHER PTHR13691:SF5: 50S RIBOSOMAL PROTEIN L2 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 TIGRFAMs TIGR01171: rplB_bact: ribosomal protein L2 SUPERFAMILY SSF50104: Translation proteins SH3-like domain |
| Prp22p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Gene3D G3DSA:3.40.50.300: no description SMART SM00316: Ribosomal protein S1-like RNA-binding domain SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00847: Helicase associated domain (HA2) Add an ann Pfam PF07717: OB_NTP_bind Pfam PF04408: HA2 Pfam PF00575: S1 Pfam PF00271: Helicase_C PANTHER PTHR18934: ATP-DEPENDENT RNA HELICASE SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases |
| Rpl2ap | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50104: Translation proteins SH3-like domain PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types |
| Arc1p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
Pfam PF01588: tRNA_bind PANTHER PTHR11946:SF3: ENDOTHELIAL-MONOCYTE ACTIVATING POLYPEPTIDE II-RELATED (EMAP-II-RELATED)UBFAMILY E MEMBER 1) PANTHER PTHR11946: ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES |
| Ceg1p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
Pfam PF01331: mRNA_cap_enzyme Pfam PF03919: mRNA_cap_C SUPERFAMILY SSF56091: DNA ligase/mRNA capping enzyme, catalytic domain PANTHER PTHR10367:SF0: MRNA CAPPING ENZYME PANTHER PTHR10367: MRNA-CAPPING ENZYME PIR superfamily PIRSF036959: mRNA capping enzyme, alpha subunit Gene3D G3DSA:3.30.470.30: no description |
| Mcm6p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Gene3D G3DSA:3.40.50.300: no description Pfam PF00493: MCM PANTHER PTHR11630:SF43: DNA REPLICATION LICENSING FACTOR MCM6 PANTHER PTHR11630: DNA REPLICATION LICENSING FACTOR SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00350: minichromosome maintenance proteins PRINTS PR01657: MCMFAMILY PRINTS PR01662: MCMPROTEIN6 |
| Rps23ap | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR11652: 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER TIGRFAMs TIGR00982: S23_S12_E_A: ribosomal protein S23 (S12) Pfam PF00164: Ribosomal_S12 PIR superfamily PIRSF002133: Ribosomal protein, S12p/S12a/S23e/organellar S12 types |
| Ded81p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PRINTS PR01042: TRNASYNTHASP Pfam PF00152: tRNA-synt_2 Pfam PF01336: tRNA_anti TIGRFAMs TIGR00457: asnS: asparagine--tRNA ligase PANTHER PTHR22594:SF6: ASPARTYL-TRNA SYNTHETASE PANTHER PTHR22594: ASPARTYL/LYSYL-TRNA SYNTHETASE Gene3D G3DSA:3.30.930.10: no description SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases |
| Rpl2bp | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR13691:SF4: 60S RIBOSOMAL PROTEIN L8 PANTHER PTHR13691: RIBOSOMAL PROTEIN L2 Pfam PF03947: Ribosomal_L2_C Pfam PF00181: Ribosomal_L2 SUPERFAMILY SSF50104: Translation proteins SH3-like domain PIR superfamily PIRSF002158: Ribosomal protein, L2p/L2a/L8e/organellar L2 types Gene3D G3DSA:2.30.30.30: no description Gene3D G3DSA:4.10.950.10: no description |
| Mcm10p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Pfam PF09329: zf-primase PANTHER PTHR13454:SF1: GB DEF: DNA43 PROTEIN PANTHER PTHR13454: FAMILY NOT NAMED |
| Sui2p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
Pfam PF07541: EIF_2_alpha Pfam PF00575: S1 SUPERFAMILY SSF110993: eIF-2-alpha, C-terminal domain SUPERFAMILY SSF116742: eIF2alpha middle domain-like Gene3D G3DSA:1.10.150.190: no description Gene3D G3DSA:3.30.70.1130: no description SMART SM00316: Ribosomal protein S1-like RNA-binding domain PANTHER PTHR10602:SF0: EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PANTHER PTHR10602: EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 |
| Anb1p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
TIGRFAMs TIGR00037: eIF_5A: translation elongation factor IF5A PIR superfamily PIRSF003025: Translation initiation factor eIF-5A PANTHER PTHR11673: TRANSLATION INITIATION FACTOR 5A-RELATED Gene3D G3DSA:2.30.30.30: no description SUPERFAMILY SSF50104: Translation proteins SH3-like domain Pfam PF01287: eIF-5a Pfam PF00467: KOW |
| Rpc25p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
TIGRFAMs TIGR00448: rpoE: DNA-directed RNA polymerase Pfam PF08292: RNA_pol_Rbc25 Pfam PF03876: SHS2_Rpb7-N Gene3D G3DSA:3.30.1490.120: no description SUPERFAMILY SSF88798: N-terminal, heterodimerisation domain of RBP7 (RpoE) PANTHER PTHR12709:SF2: DNA-DIRECTED RNA POLYMERASE III 25 KD POLYPEPTIDE PANTHER PTHR12709: DNA-DIRECTED RNA POLYMERASE II, III |
| Trm2p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PANTHER PTHR11061:SF21: TRNA (URACIL-5-)-METHYLTRANSFERASE PANTHER PTHR11061: RNA M5U METHYLTRANSFERASE FAMILY Gene3D G3DSA:3.40.50.150: no description SUPERFAMILY SSF53335: S-adenosyl-L-methionine-dependent methyltransferases Pfam PF05958: tRNA_U5-meth_tr Pfam PF01938: TRAM |
| Dps1p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PRINTS PR01042: TRNASYNTHASP PANTHER PTHR22594:SF10: SUBFAMILY NOT NAMED PANTHER PTHR22594: ASPARTYL/LYSYL-TRNA SYNTHETASE Gene3D G3DSA:3.30.930.10: no description TIGRFAMs TIGR00458: aspS_nondisc: aspartate--tRNA(Asn) ligase Pfam PF00152: tRNA-synt_2 Pfam PF01336: tRNA_anti SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases |
| Rps28bp | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Pfam PF01200: Ribosomal_S28e ProDom PD005541: RS28_YEAST_P02380; PANTHER PTHR10769: 40S RIBOSOMAL PROTEIN S28 |
| Mcm5p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PRINTS PR01657: MCMFAMILY PRINTS PR01661: MCMPROTEIN5 PANTHER PTHR11630:SF42: DNA REPLICATION LICENSING FACTOR MCM5 PANTHER PTHR11630: DNA REPLICATION LICENSING FACTOR Gene3D G3DSA:3.30.1640.10: no description Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00350: minichromosome maintenance proteins Pfam PF00493: MCM |
| Mrps17p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
PANTHER PTHR10744:SF5: 37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL PANTHER PTHR10744: 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER ProDom PD001295: RTS17_YEAST_Q03246; Pfam PF00366: Ribosomal_S17 |
| Rrp5p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR23270:SF0: SUBFAMILY NOT NAMED PANTHER PTHR23270: PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5) SMART SM00316: Ribosomal protein S1-like RNA-binding domain SMART SM00386: HAT (Half-A-TPR) repeats SUPERFAMILY SSF48452: TPR-like Gene3D G3DSA:1.25.40.10: no description Pfam PF00575: S1 |
| Tif11p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PANTHER PTHR21668:SF0: SUBFAMILY NOT NAMED PANTHER PTHR21668: EIF-1A ProDom PD005579: IF1A_YEAST_P38912; TIGRFAMs TIGR00523: eIF-1A: translation initiation factor eIF-1A Pfam PF01176: eIF-1a SMART SM00652: eukaryotic translation initiation factor 1A |
| Msk1p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
PRINTS PR00982: TRNASYNTHLYS SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases PANTHER PTHR22594:SF4: LYSYL-TRNA SYNTHETASE PANTHER PTHR22594: ASPARTYL/LYSYL-TRNA SYNTHETASE TIGRFAMs TIGR00499: lysS_bact: lysine--tRNA ligase Pfam PF00152: tRNA-synt_2 Pfam PF01336: tRNA_anti Gene3D G3DSA:3.30.930.10: no description |
| Rfa2p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
Pfam PF01336: tRNA_anti Pfam PF08784: RPA_C PIR superfamily PIRSF036949: Replication protein A, RPA32 subunit PANTHER PTHR13989:SF7: SUBFAMILY NOT NAMED PANTHER PTHR13989: REPLICATION PROTEIN A-RELATED SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain Gene3D G3DSA:1.10.10.10: no description |
| Mrps12p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Pfam PF00164: Ribosomal_S12 PIR superfamily PIRSF002133: Ribosomal protein, S12p/S12a/S23e/organellar S12 types PANTHER PTHR11652: 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER TIGRFAMs TIGR00981: rpsL_bact: ribosomal protein S12 PRINTS PR01034: RIBOSOMALS12 |
| Dnl4p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
SUPERFAMILY SSF56091: DNA ligase/mRNA capping enzyme, catalytic domain SUPERFAMILY SSF52113: BRCT domain Gene3D G3DSA:3.30.1490.70: no description Gene3D G3DSA:3.30.470.30: no description Pfam PF01068: DNA_ligase_A_M Pfam PF00533: BRCT Pfam PF04675: DNA_ligase_A_N TIGRFAMs TIGR00574: dnl1: DNA ligase I, ATP-dependent (dnl1) SMART SM00292: breast cancer carboxy-terminal domain PANTHER PTHR10459:SF7: DNA LIGASE IV PANTHER PTHR10459: DNA LIGASE |
| Rps28ap | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
ProDom PD005541: RS28_YEAST_P02380; Pfam PF01200: Ribosomal_S28e PANTHER PTHR10769: 40S RIBOSOMAL PROTEIN S28 |
| Rpb8p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
SMART SM00658: RNA polymerase subunit PANTHER PTHR10917:SF0: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 PANTHER PTHR10917: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 PIR superfamily PIRSF000779: DNA-directed RNA polymerase, RPB8 subunit Pfam PF03870: RNA_pol_Rpb8 |
| Msd1p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.30.1360.30: no description TIGRFAMs TIGR00459: aspS_bact: aspartate--tRNA ligase PANTHER PTHR22594:SF5: ASPARTYL-TRNA SYNTHETASE PANTHER PTHR22594: ASPARTYL/LYSYL-TRNA SYNTHETASE PRINTS PR01042: TRNASYNTHASP SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases Pfam PF00152: tRNA-synt_2 Pfam PF01336: tRNA_anti |
| Rvb2p | SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description Pfam PF06068: TIP49 PANTHER PTHR11093:SF2: RUVB-LIKE 2 (REPTIN) PANTHER PTHR11093: RUVB-RELATED REPTIN AND PONTIN SMART SM00382: ATPases associated with a variety of cellula |
| Mcm4p | Gene3D G3DSA:2.40.50.140: no description SUPERFAMILY SSF50249: Nucleic acid-binding proteins |
Pfam PF00493: MCM Gene3D G3DSA:2.20.28.10: no description Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PRINTS PR01657: MCMFAMILY PRINTS PR01660: MCMPROTEIN4 PANTHER PTHR11630:SF45: DNA REPLICATION LICENSING FACTOR MCM4 PANTHER PTHR11630: DNA REPLICATION LICENSING FACTOR SMART SM00350: minichromosome maintenance proteins |
| Rps23bp | SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description |
TIGRFAMs TIGR00982: S23_S12_E_A: ribosomal protein S23 (S12) PIR superfamily PIRSF002133: Ribosomal protein, S12p/S12a/S23e/organellar S12 types PANTHER PTHR11652: 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER Pfam PF00164: Ribosomal_S12 |
This table lists domains/motifs that are unique to Cdc13p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Cdc13p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Cdc13p | ||
|---|---|---|
| Database source | Accession number | Description |
| Pfam | PF02765 | Telo_bind |
| SMART | SM00976 | Telomeric single stranded DNA binding POT1/ |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Cdc13p .
