RAM1/YDL090C Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ram1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Ram1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ram1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Ram1p
Protein	Motifs in common with Ram1p	Other motifs in this protein (but not in Ram1p )
Cdc43p	Pfam PF00432: Prenyltrans SUPERFAMILY SSF48239: Terpenoid cyclases/Protein prenyltransferases PANTHER PTHR11774: GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT Gene3D G3DSA:1.50.10.20: no description	PANTHER PTHR11774:SF3: TYPE I GERANYLGERANYLTRANSFERASE BETA SUBUNIT
Erg7p	Gene3D G3DSA:1.50.10.20: no description SUPERFAMILY SSF48239: Terpenoid cyclases/Protein prenyltransferases Pfam PF00432: Prenyltrans Pfam PF13249: Prenyltrans_2	PANTHER PTHR32548:SF0: LANOSTEROL SYNTHASE PANTHER PTHR32548: LANOSTEROL SYNTHASE TIGRFAMs TIGR01787: squalene_cyclas: squalene/oxidosqualene cyclases
Bet2p	SUPERFAMILY SSF48239: Terpenoid cyclases/Protein prenyltransferases PANTHER PTHR11774: GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT Gene3D G3DSA:1.50.10.20: no description Pfam PF00432: Prenyltrans	PANTHER PTHR11774:SF5: GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT

Unique domains/motifs

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This table lists domains/motifs that are unique to Ram1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ram1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Ram1p
Database source	Accession number	Description
PANTHER	PTHR11774:SF6	PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAAX FARNESYLTRANSFERASE BETA SUBUNIT) (RAS PROTEINS PRENYLTRANSFERASE BETA) (FTASE-BETA)

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Ram1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ram1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Ram1p .