APC11/YDL008W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Apc11p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Apc11p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Apc11p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Apc11p
Protein Motifs in common with Apc11p Other motifs in this protein (but not in Apc11p )
Vps8p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR31202:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR31202: FAMILY NOT NAMED
SUPERFAMILY SSF50978: WD40 repeat-like
Gene3D G3DSA:2.130.10.10: no description
Pfam PF12816: Vps8
Sea4p Gene3D G3DSA:3.30.40.10: no description
Gene3D G3DSA:2.130.10.10: no description
PANTHER PTHR16453:SF11: WD REPEAT-CONTAINING PROTEIN YBL104C
PANTHER PTHR16453: WD40 DOMAIN-CONTAINING PROTEIN
SUPERFAMILY SSF50978: WD40 repeat-like
Ubp14p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF54001: Cysteine proteinases
SUPERFAMILY SSF46934: UBA-like
SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z
SMART SM00165: Ubiquitin associated domain
PIR superfamily PIRSF016308: Ubiquitin-specific protease (ubiquitin carboxyl-terminal hydrolase)
PANTHER PTHR24006:SF175: HYPOTHETICAL PROTEIN
PANTHER PTHR24006: FAMILY NOT NAMED
Gene3D G3DSA:1.10.8.10: no description
Pfam PF00443: UCH
Pfam PF02148: zf-UBP
Pfam PF00627: UBA
Ybr062cp SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
SMART SM00184: Ring finger
Pfam PF13639: zf-RING_2
Rad16p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
SMART SM00487: DEAD-like helicases superfamily
SMART SM00184: Ring finger
SMART SM00490: helicase superfamily c-terminal domain
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:3.40.50.300: no description
PANTHER PTHR10799:SF62: DNA REPAIR HELICASE RAD5,16
PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED
Pfam PF00176: SNF2_N
Pfam PF00271: Helicase_C
Pfam PF00097: zf-C3HC4
Rad18p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
SMART SM00184: Ring finger
SMART SM00734: Rad18-like CCHC zinc finger
SMART SM00513: Putative DNA-binding (bihelical) motif pred
TIGRFAMs TIGR00599: rad18: DNA repair protein rad18
Pfam PF00097: zf-C3HC4
Pfam PF02037: SAP
PANTHER PTHR14134: E3 UBIQUITIN-PROTEIN LIGASE RAD18
Bre1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Pfam PF08647: BRE1
Pfam PF13923: zf-C3HC4_2
PANTHER PTHR23163:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR23163: RING FINGER PROTEIN-RELATED
SMART SM00184: Ring finger
Ufd2p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Pfam PF10408: Ufd2P_core
Pfam PF04564: U-box
PANTHER PTHR13931:SF2: UBIQUITINATION FACTOR E4B/UFD2(YEAST)
PANTHER PTHR13931: UBIQUITINATION FACTOR E4
SMART SM00504: Modified RING finger domain
San1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
SMART SM00184: Ring finger
Pfam PF13639: zf-RING_2
PANTHER PTHR12477:SF27: PUTATIVE UNCHARACTERIZED PROTEIN
PANTHER PTHR12477: SYNOVIOLIN-RELATED
Rmd5p Gene3D G3DSA:3.30.40.10: no description
Pfam PF13445: zf-RING_UBOX
Pfam PF10607: CLTH
PANTHER PTHR12170:SF3: SPORULATION PROTEIN RMD5-RELATED (GLUCOSE-INDUCED DEGRADATION PROTEIN 2)
PANTHER PTHR12170: MACROPHAGE ERYTHROBLAST ATTACHER-RELATED
SMART SM00668: C-terminal to LisH motif.
Pex10p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
Pfam PF04757: Pex2_Pex12
Pfam PF13639: zf-RING_2
SMART SM00184: Ring finger
PANTHER PTHR23350: PEROXISOME ASSEMBLY PROTEIN 10
Hel2p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
PANTHER PTHR22938:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR22938: ZINC FINGER PROTEIN 598
Pfam PF13920: zf-C3HC4_3
Pib1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA
SMART SM00184: Ring finger
PANTHER PTHR18851:SF6: FYVE AND COILED-COIL DOMAIN CONTAINING 1
PANTHER PTHR18851: FYVE AND COILED-COIL DOMAIN CONTAINING 1
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Pfam PF01363: FYVE
Pfam PF13639: zf-RING_2
Pep7p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
SUPERFAMILY SSF140125: Rabenosyn-5 Rab-binding domain-like
SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA
PANTHER PTHR13510:SF9: VACUOLAR SEGREGATION PROTEIN PEP7 (VAC1 PROTEIN)
PANTHER PTHR13510: FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED
Pfam PF01363: FYVE
Siz1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR10782:SF13: E3 SUMO-PROTEIN LIGASE
PANTHER PTHR10782: ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
SMART SM00513: Putative DNA-binding (bihelical) motif predi
SUPERFAMILY SSF68906: SAP domain
Pfam PF14324: PINIT
Pfam PF02891: zf-MIZ
Pfam PF02037: SAP
Gene3D G3DSA:1.10.720.30: no description
Tfb3p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
Pfam PF06391: MAT1
PANTHER PTHR12683:SF4: TRANSCRIPTION/REPAIR FACTOR TFIIH
PANTHER PTHR12683: FAMILY NOT NAMED
TIGRFAMs TIGR00570: cdk7: CDK-activating kinase assembly factor MAT1
PIR superfamily PIRSF003338: CDK-activating kinase assembly factor MAT1
Mms21p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR21330:SF1: UNCHARACTERIZED
PANTHER PTHR21330: UNCHARACTERIZED
Pfam PF11789: zf-Nse
Jhd1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF51197: Clavaminate synthase-like
SMART SM00249: PHD zinc finger
SMART SM00558: A domain family that is part of the cupin me
PANTHER PTHR23123:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR23123: PHD/F-BOX CONTAINING PROTEIN
Gene3D G3DSA:2.60.120.650: no description
Mot2p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF54928: RNA-binding domain, RBD
PANTHER PTHR12603:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR12603: CCR4-NOT TRANSCRIPTION COMPLEX RELATED
Gene3D G3DSA:3.30.70.330: no description
SMART SM00361: RNA recognition motif
Pfam PF14570: zf-RING_4
Pfam PF13893: RRM_5
Slx8p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR12313: RNF5
SMART SM00184: Ring finger
Pfam PF00097: zf-C3HC4
Sad1p Gene3D G3DSA:3.30.40.10: no description
Pfam PF02148: zf-UBP
Pfam PF00443: UCH
SUPERFAMILY SSF54001: Cysteine proteinases
SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z
PANTHER PTHR24006:SF87: SUBFAMILY NOT NAMED
PANTHER PTHR24006: FAMILY NOT NAMED
Fab1p Gene3D G3DSA:3.30.40.10: no description
SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA
SMART SM00330: Phosphatidylinositol phosphate kinases
SUPERFAMILY SSF56104: SAICAR synthase-like
SUPERFAMILY SSF52029: GroEL apical domain-like
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
PANTHER PTHR11353:SF14: FYVE FINGER-CONTAINING PHOSPHOINOSITIDE KINASE, FYV1
PANTHER PTHR11353: CHAPERONIN
Pfam PF01504: PIP5K
Pfam PF00118: Cpn60_TCP1
Pfam PF01363: FYVE
Gene3D G3DSA:3.50.7.10: no description
Gene3D G3DSA:3.30.800.10: no description
Gene3D G3DSA:3.30.810.10: no description
Pib2p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR22835:SF51: PREDICTED: SIMILAR TO ENDOFIN
PANTHER PTHR22835: ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Pfam PF01363: FYVE
SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA
Snt2p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
SUPERFAMILY SSF46689: Homeodomain-like
SUPERFAMILY SSF57783: Zinc beta-ribbon
Pfam PF01426: BAH
Pfam PF00628: PHD
Pfam PF13832: zf-HC5HC2H_2
PANTHER PTHR13793:SF12: PHD FINGER PROTEIN
PANTHER PTHR13793: PHD FINGER PROTEINS
SMART SM00439: Bromo adjacent homology domain
SMART SM00249: PHD zinc finger
SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin
Etp1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
SMART SM00184: Ring finger
SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z
Pfam PF07576: BRAP2
Pfam PF02148: zf-UBP
Pfam PF13639: zf-RING_2
ProDom PD017029: Q6Q5F9_YEAST_Q6Q5F9;
PANTHER PTHR24007: FAMILY NOT NAMED
Yng2p Gene3D G3DSA:3.30.40.10: no description
SMART SM00249: PHD zinc finger
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
PANTHER PTHR10333: INHIBITOR OF GROWTH PROTEIN
Pfam PF12998: ING
Pfam PF00628: PHD
Dma1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:2.60.200.20: no description
PANTHER PTHR15067:SF4: SUBFAMILY NOT NAMED
PANTHER PTHR15067: FAMILY NOT NAMED
SMART SM00240: Forkhead associated domain
SUPERFAMILY SSF49879: SMAD/FHA domain
Pfam PF00498: FHA
Ssm4p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
PANTHER PTHR13145:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR13145: SSM4 PROTEIN
Pfam PF12906: RINGv
SMART SM00744: The RING-variant domain is a C4HC3 zinc-fing
Set4p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF82199: SET domain
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Pfam PF00856: SET
Pfam PF00628: PHD
SMART SM00249: PHD zinc finger
SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora
Gene3D G3DSA:2.170.270.10: no description
PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5
Far1p Gene3D G3DSA:3.30.40.10: no description
none
Jhd2p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR10694:SF8: RETINOBLASTOMA BINDING PROTEIN-RELATED
PANTHER PTHR10694: JUMONJI DOMAIN CONTAINING PROTEIN
Pfam PF02373: JmjC
Pfam PF02375: JmjN
Pfam PF00628: PHD
SMART SM00545: Small domain found in the jumonji family of
SMART SM00249: PHD zinc finger
SMART SM00558: A domain family that is part of the cupin me
SUPERFAMILY SSF51197: Clavaminate synthase-like
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Bye1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF46942: Elongation factor TFIIS domain 2
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Pfam PF07500: TFIIS_M
Pfam PF00628: PHD
Pfam PF07744: SPOC
PANTHER PTHR11477: TRANSCRIPTION ELONGATION FACTOR S-II
SMART SM00249: PHD zinc finger
SMART SM00510: Domain in the central regions of transcripti
Gene3D G3DSA:1.10.472.30: no description
Tfa1p Gene3D G3DSA:3.30.40.10: no description
Pfam PF02002: TFIIE_alpha
Pfam PF08271: TF_Zn_Ribbon
SMART SM00531: Transcription initiation factor IIE
SUPERFAMILY SSF57783: Zinc beta-ribbon
PANTHER PTHR13097:SF3: GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1
PANTHER PTHR13097: TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT
Tul1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
PANTHER PTHR22764:SF26: SUBFAMILY NOT NAMED
PANTHER PTHR22764: RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).
SMART SM00184: Ring finger
Pfam PF13639: zf-RING_2
Mpe1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
SMART SM00343: zinc finger
Pfam PF08783: DWNN
Pfam PF11789: zf-Nse
PANTHER PTHR15439:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR15439: RETINOBLASTOMA-BINDING PROTEIN 6
Hel1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
Pfam PF01485: IBR
Pfam PF00097: zf-C3HC4
SMART SM00184: Ring finger
SMART SM00647: In Between Ring fingers
PANTHER PTHR11685:SF14: GB DEF: HYPOTHETICAL 63.6 KDA PROTEIN IN YPT52-GCN3 INTERGENIC REGION
PANTHER PTHR11685: ARIADNE RING ZINC FINGER
Set3p Gene3D G3DSA:3.30.40.10: no description
SMART SM00249: PHD zinc finger
SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora
Pfam PF00628: PHD
Pfam PF00856: SET
PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5
Gene3D G3DSA:2.170.270.10: no description
SUPERFAMILY SSF82199: SET domain
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Prp19p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:2.130.10.10: no description
PANTHER PTHR13889:SF1: PRE-MRNA SPLICING FACTOR PRP19, YEAST
PANTHER PTHR13889: PRE-MRNA SPLICING FACTOR PRP19-RELATED
SUPERFAMILY SSF50978: WD40 repeat-like
SMART SM00504: Modified RING finger domain
Pfam PF08606: Prp19
Rad5p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
PANTHER PTHR10799:SF234: SUBFAMILY NOT NAMED
PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED
Gene3D G3DSA:3.40.50.300: no description
SMART SM00910: no description
SMART SM00487: DEAD-like helicases superfamily
SMART SM00184: Ring finger
SMART SM00490: helicase superfamily c-terminal domain
Pfam PF00176: SNF2_N
Pfam PF08797: HIRAN
Pfam PF00271: Helicase_C
Pfam PF13639: zf-RING_2
Ioc2p Gene3D G3DSA:3.30.40.10: no description
none
Pep3p Gene3D G3DSA:3.30.40.10: no description
Pfam PF05131: Pep3_Vps18
Pfam PF00637: Clathrin
Pfam PF10367: Vps39_2
SMART SM00299: Clathrin heavy chain repeat homology
PANTHER PTHR23323:SF29: PREDICTED: SIMILAR TO VACUOLAR PROTEIN SORTING PROTEIN 18
PANTHER PTHR23323: VACUOLAR MEMBRANE PROTEIN RELATED
Irc20p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.40.50.300: no description
SMART SM00487: DEAD-like helicases superfamily
SMART SM00184: Ring finger
SMART SM00490: helicase superfamily c-terminal domain
PANTHER PTHR10799:SF233: SUBFAMILY NOT NAMED
PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
Pfam PF00176: SNF2_N
Pfam PF13639: zf-RING_2
Cwc24p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR12930: ZINC FINGER PROTEIN 183
SUPERFAMILY SSF90229: CCCH zinc finger
SMART SM00356: zinc finger
SMART SM00184: Ring finger
Pfam PF00642: zf-CCCH
Pfam PF13923: zf-C3HC4_2
Gene3D G3DSA:4.10.1000.10: no description
Cst9p SUPERFAMILY SSF57850: RING/U-box
PANTHER PTHR22663:SF10: UNCHARACTERIZED
PANTHER PTHR22663: UNCHARACTERIZED
Pfam PF14634: zf-RING_5
Mag2p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Pfam PF14634: zf-RING_5
PANTHER PTHR12983:SF6: SUBFAMILY NOT NAMED
PANTHER PTHR12983: FAMILY NOT NAMED
SMART SM00184: Ring finger
Itt1p SUPERFAMILY SSF57850: RING/U-box
SMART SM00184: Ring finger
SMART SM00647: In Between Ring fingers
PANTHER PTHR11685:SF58: PUTATIVE UNCHARACTERIZED PROTEIN
PANTHER PTHR11685: ARIADNE RING ZINC FINGER
Pfam PF01485: IBR
Pex12p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
Pfam PF04757: Pex2_Pex12
PANTHER PTHR12888:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR12888: PEROXISOME ASSEMBLY PROTEIN 12 (PEROXIN-12)
Rco1p Gene3D G3DSA:3.30.40.10: no description
Pfam PF00628: PHD
SMART SM00249: PHD zinc finger
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
PANTHER PTHR25462:SF4: SUBFAMILY NOT NAMED
PANTHER PTHR25462: FAMILY NOT NAMED
Ecm5p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF46774: ARID-like
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Gene3D G3DSA:1.10.150.60: no description
Pfam PF01388: ARID
Pfam PF00628: PHD
PANTHER PTHR10694:SF8: RETINOBLASTOMA BINDING PROTEIN-RELATED
PANTHER PTHR10694: JUMONJI DOMAIN CONTAINING PROTEIN
SMART SM01014: ARID/BRIGHT DNA binding domain
SMART SM00501: BRIGHT, ARID (A/T-rich interaction domain) d
SMART SM00558: A domain family that is part of the cupin me
SMART SM00249: PHD zinc finger
Ubp8p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF54001: Cysteine proteinases
PANTHER PTHR24006:SF72: SUBFAMILY NOT NAMED
PANTHER PTHR24006: FAMILY NOT NAMED
SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z
Pfam PF00443: UCH
Pfam PF02148: zf-UBP
Pep5p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
SMART SM00249: PHD zinc finger
SMART SM00184: Ring finger
Pfam PF12451: VPS11_C
PIR superfamily PIRSF007860: Vacuolar protein sorting-associated protein 11
Gene3D G3DSA:2.130.10.10: no description
SUPERFAMILY SSF50978: WD40 repeat-like
PANTHER PTHR23323:SF24: VACUOLAR MEMBRANE PROTEIN PEP5, 11
PANTHER PTHR23323: VACUOLAR MEMBRANE PROTEIN RELATED
Rkr1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR12389: ZINC FINGER PROTEIN 294
SUPERFAMILY SSF48371: ARM repeat
Pfam PF13639: zf-RING_2
SMART SM00744: The RING-variant domain is a C4HC3 zinc-fing
Pho23p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR10333: INHIBITOR OF GROWTH PROTEIN
Pfam PF12998: ING
Pfam PF00628: PHD
SMART SM00249: PHD zinc finger
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Dma2p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:2.60.200.20: no description
SUPERFAMILY SSF49879: SMAD/FHA domain
PANTHER PTHR15067:SF5: RING FINGER PROTEIN YNL116W
PANTHER PTHR15067: FAMILY NOT NAMED
SMART SM00240: Forkhead associated domain
Pfam PF00498: FHA
Ncs2p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR20882:SF3: ACR271CP
PANTHER PTHR20882: FAMILY NOT NAMED
Pfam PF10288: DUF2392
Vps27p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR13856:SF8: VACUOLAR PROTEIN SORTING-ASSOCIATED (VPS27)
PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY
SMART SM00288: Domain present in VPS-27, Hrs and STAM
SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA
SMART SM00726: Ubiquitin-interacting motif.
PIR superfamily PIRSF036956: Ubiquitin binding protein, Hrs/Vps27 type
Gene3D G3DSA:1.25.40.90: no description
Pfam PF00790: VHS
Pfam PF01363: FYVE
SUPERFAMILY SSF48464: ENTH/VHS domain
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Hrd1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR12477:SF7: SYNOVIOLIN-RELATED
PANTHER PTHR12477: SYNOVIOLIN-RELATED
Pfam PF13639: zf-RING_2
SMART SM00184: Ring finger
Psh1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
SMART SM00184: Ring finger
PANTHER PTHR25462:SF189: PREDICTED: HYPOTHETICAL PROTEIN, PARTIAL
PANTHER PTHR25462: FAMILY NOT NAMED
Pfam PF15227: zf-C3HC4_4
Hrt1p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR11210: RING FINGER
SUPERFAMILY SSF57850: RING/U-box
Pfam PF12678: zf-rbx1
PANTHER PTHR11210:SF2: RING FINGER 1
Rtc1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
Pfam PF00400: WD40
Gene3D G3DSA:2.130.10.10: no description
PANTHER PTHR22850:SF4: PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR
PANTHER PTHR22850: WD40 REPEAT FAMILY
SMART SM00320: WD40 repeats
SUPERFAMILY SSF50978: WD40 repeat-like
Yng1p Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR10333: INHIBITOR OF GROWTH PROTEIN
SMART SM00249: PHD zinc finger
Pfam PF00628: PHD
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Nfi1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
PANTHER PTHR10782:SF13: E3 SUMO-PROTEIN LIGASE
PANTHER PTHR10782: ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
SMART SM00513: Putative DNA-binding (bihelical) motif predi
Pfam PF14324: PINIT
Pfam PF02891: zf-MIZ
Pfam PF02037: SAP
SUPERFAMILY SSF68906: SAP domain
Gene3D G3DSA:1.10.720.30: no description
Uls1p Gene3D G3DSA:3.30.40.10: no description
SUPERFAMILY SSF57850: RING/U-box
PANTHER PTHR10799:SF231: SUBFAMILY NOT NAMED
PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED
SMART SM00487: DEAD-like helicases superfamily
SMART SM00184: Ring finger
SMART SM00490: helicase superfamily c-terminal domain
Gene3D G3DSA:3.40.50.300: no description
Pfam PF00176: SNF2_N
Pfam PF00271: Helicase_C
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
Spp1p Gene3D G3DSA:3.30.40.10: no description
Pfam PF00628: PHD
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
PANTHER PTHR12321:SF4: BIP2 PROTEIN
PANTHER PTHR12321: CPG BINDING PROTEIN
SMART SM00249: PHD zinc finger
Cti6p Gene3D G3DSA:3.30.40.10: no description
SMART SM00249: PHD zinc finger
PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Pfam PF00628: PHD
Nto1p Gene3D G3DSA:3.30.40.10: no description
SMART SM00249: PHD zinc finger
Pfam PF13832: zf-HC5HC2H_2
Pfam PF13831: PHD_2
Pfam PF10513: EPL1
PANTHER PTHR13793:SF39: PHD-FINGER, PUTATIVE
PANTHER PTHR13793: PHD FINGER PROTEINS
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
Asr1p SUPERFAMILY SSF57850: RING/U-box
Gene3D G3DSA:3.30.40.10: no description
Pfam PF13639: zf-RING_2
PANTHER PTHR22764:SF27: ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
PANTHER PTHR22764: RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).
SUPERFAMILY SSF57903: FYVE/PHD zinc finger
SMART SM00184: Ring finger

Unique domains/motifs


This table lists domains/motifs that are unique to Apc11p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Apc11p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Apc11p
Database source Accession number Description
PANTHER PTHR11210:SF10 ZINC FINGER DOMAIN CONTAINING PROTEIN
Pfam PF12861 zf-Apc11

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Apc11p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Apc11p .


The following external links can be used to directly search external databases for domain/motif information for Apc11p .