MCD1/YDL003W Domains/Motifs and Signal Peptides 
To directly search external databases for Mcd1p domain/motif information see the external links section.
| Click on image for expanded interactive view |
|---|
This table lists proteins that share domains/motifs in common with those found in Mcd1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Mcd1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Mcd1p | ||
|---|---|---|
| Protein | Motifs in common with Mcd1p | Other motifs in this protein (but not in Mcd1p ) |
| Map2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PRINTS PR00599: MAPEPTIDASE TIGRFAMs TIGR00501: met_pdase_II: methionine aminopeptidase, type II Gene3D G3DSA:3.90.230.10: no description Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR10804:SF9: METHIONINE AMINOPEPTIDASE 2 PANTHER PTHR10804: PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) Pfam PF00557: Peptidase_M24 SUPERFAMILY SSF55920: Creatinase/aminopeptidase |
| Sro9p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR22792:SF17: LA-RELATED PROTEIN 5 (LA RIBONUCLEOPROTEIN DOMAIN FAMILY MEMBER 5) SOURCE:UNIPR PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED Pfam PF05383: La SMART SM00715: Domain in the RNA-binding Lupus La protein; Gene3D G3DSA:1.10.10.10: no description |
| Hcm1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PRINTS PR00053: FORKHEAD Gene3D G3DSA:1.10.10.10: no description Pfam PF00250: Fork_head PANTHER PTHR11829: FAMILY NOT NAMED SMART SM00339: FORKHEAD |
| Lhp1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Pfam PF05383: La Pfam PF00076: RRM_1 PANTHER PTHR22792:SF2: LUPUS LA PROTEIN (LA RIBONUCLEOPROTEIN) PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED SUPERFAMILY SSF54928: RNA-binding domain, RBD Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:3.30.70.330: no description PRINTS PR00302: LUPUSLA SMART SM00715: Domain in the RNA-binding Lupus La protein; |
| Rpn6p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00753: PCI/PINT associated module SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF01399: PCI Pfam PF13429: TPR_15 Gene3D G3DSA:1.25.40.10: no description Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR10678:SF2: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11 (26S PROTEASOME REGULATORY SUBUNIT S9) PANTHER PTHR10678: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 |
| Cdc53p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00182: Cullin SMART SM00884: Cullin protein neddylation domain Gene3D G3DSA:1.20.1310.10: no description Gene3D G3DSA:4.10.1030.10: no description Gene3D G3DSA:1.10.10.10: no description SUPERFAMILY SSF74788: Cullin repeat-like SUPERFAMILY SSF75632: Cullin homology domain PANTHER PTHR11932:SF15: GB DEF: CELL DIVISION CONTROL PROTEIN 53 (CULLIN A) PANTHER PTHR11932: CULLIN Pfam PF00888: Cullin Pfam PF10557: Cullin_Nedd8 |
| Rpn5p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.10.10.10: no description SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF01399: PCI PANTHER PTHR10855:SF1: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 PANTHER PTHR10855: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| Rpn9p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR10539: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 Gene3D G3DSA:1.10.10.10: no description SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF01399: PCI |
| Slf1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR22792:SF18: PRION-LIKE-(Q/N-RICH)-DOMAIN-BEARING PROTEIN PROTEIN 64, ISOFORM A PANTHER PTHR22792: LUPUS LA PROTEIN-RELATED Pfam PF05383: La SMART SM00715: Domain in the RNA-binding Lupus La protein; Gene3D G3DSA:1.10.10.10: no description |
| Rpn3p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.10.10.10: no description Pfam PF08375: Rpn3_C Pfam PF01399: PCI PANTHER PTHR10758:SF2: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 PANTHER PTHR10758: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 SMART SM00753: PCI/PINT associated module SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a |
| Rgd2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR23065: PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 SMART SM00055: Fes/CIP4 homology domain SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00324: GTPase-activator protein for Rho-like GTPase Gene3D G3DSA:1.10.555.10: no description SUPERFAMILY SSF48350: GTPase activation domain, GAP Pfam PF00611: FCH Pfam PF00610: DEP Pfam PF00620: RhoGAP |
| Hsf1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00415: heat shock factor Gene3D G3DSA:1.10.10.10: no description PRINTS PR00056: HSFDOMAIN Pfam PF00447: HSF_DNA-bind PANTHER PTHR10015:SF29: SUBFAMILY NOT NAMED PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR |
| Cul3p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.20.1310.10: no description Gene3D G3DSA:4.10.1030.10: no description Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR11932:SF14: GB DEF: CULLIN B (CULLIN 3) PANTHER PTHR11932: CULLIN SUPERFAMILY SSF75632: Cullin homology domain SUPERFAMILY SSF74788: Cullin repeat-like Pfam PF00888: Cullin Pfam PF10557: Cullin_Nedd8 SMART SM00182: Cullin SMART SM00884: Cullin protein neddylation domain |
| Tfg2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Pfam PF02270: TFIIF_beta PANTHER PTHR10445:SF0: GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 PANTHER PTHR10445: GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 SUPERFAMILY SSF50916: Rap30/74 interaction domains Gene3D G3DSA:1.10.10.10: no description |
| Rom1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00325: Guanine nucleotide exchange factor for Rho/R SMART SM00036: Domain found in NIK1-like kinases, mouse cit Pfam PF00780: CNH Pfam PF00621: RhoGEF Pfam PF00610: DEP PANTHER PTHR22825: RHO GUANINE EXCHANGE FACTOR Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:1.20.900.10: no description SUPERFAMILY SSF48065: DBL homology domain (DH-domain) SUPERFAMILY SSF50729: PH domain-like |
| Mga1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00415: heat shock factor PANTHER PTHR10015:SF4: PROTEIN MGA1 PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR PRINTS PR00056: HSFDOMAIN Pfam PF00447: HSF_DNA-bind Gene3D G3DSA:1.10.10.10: no description |
| Skn7p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Pfam PF00447: HSF_DNA-bind Pfam PF00072: Response_reg Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:3.40.50.2300: no description SMART SM00415: heat shock factor SMART SM00448: cheY-homologous receiver domain SUPERFAMILY SSF52172: CheY-like PRINTS PR00056: HSFDOMAIN PIR superfamily PIRSF002595: Response regulator, SKN7 type PANTHER PTHR10015:SF6: TRANSCRIPTION FACTOR SKN7 PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR |
| Fkh1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SUPERFAMILY SSF49879: SMAD/FHA domain PRINTS PR00053: FORKHEAD PANTHER PTHR11829:SF50: SUBFAMILY NOT NAMED PANTHER PTHR11829: FAMILY NOT NAMED Gene3D G3DSA:2.60.200.20: no description Gene3D G3DSA:1.10.10.10: no description Pfam PF00250: Fork_head Pfam PF00498: FHA SMART SM00240: Forkhead associated domain SMART SM00339: FORKHEAD |
| Cdc6p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Pfam PF13401: AAA_22 Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.8.60: no description Gene3D G3DSA:1.10.10.10: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PANTHER PTHR10763:SF7: CELL DIVISION CONTROL PROTEIN 6 PANTHER PTHR10763: CELL DIVISION CONTROL PROTEIN 6-RELATED SMART SM00382: ATPases associated with a variety of cellula PIR superfamily PIRSF001767: Cell division control protein Cdc6 |
| Vps25p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR13149:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13149: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 Pfam PF05871: ESCRT-II Gene3D G3DSA:1.10.10.570: no description Gene3D G3DSA:1.10.10.10: no description |
| Iml1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.10.10.10: no description Pfam PF12257: DUF3608 Pfam PF00610: DEP SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple PANTHER PTHR13179:SF8: SUBFAMILY NOT NAMED PANTHER PTHR13179: DEP DOMAIN CONTAINING PROTEIN 5 |
| Hms2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR10015:SF30: UNCHARACTERIZED PROTEIN YJR147W PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR SMART SM00415: heat shock factor Pfam PF00447: HSF_DNA-bind PRINTS PR00056: HSFDOMAIN Gene3D G3DSA:1.10.10.10: no description |
| Apc2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR11932:SF4: ANAPHASE-PROMOTING COMPLEX SUBUNIT RELATED PANTHER PTHR11932: CULLIN Gene3D G3DSA:4.10.1030.10: no description Gene3D G3DSA:1.10.10.10: no description Pfam PF00888: Cullin Pfam PF08672: APC2 SMART SM01013: Anaphase promoting complex (APC) subunit SUPERFAMILY SSF75632: Cullin homology domain |
| Rfx1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.10.10.10: no description Pfam PF02257: RFX_DNA_binding PANTHER PTHR12619:SF5: RFX TRANSCRIPTION FACTOR PANTHER PTHR12619: RFX TRANSCRIPTION FACTOR FAMILY |
| Rom2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SUPERFAMILY SSF48065: DBL homology domain (DH-domain) SUPERFAMILY SSF50729: PH domain-like SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00325: Guanine nucleotide exchange factor for Rho/R SMART SM00036: Domain found in NIK1-like kinases, mouse cit Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:1.20.900.10: no description PANTHER PTHR22825: RHO GUANINE EXCHANGE FACTOR Pfam PF00780: CNH Pfam PF00621: RhoGEF Pfam PF00610: DEP |
| Vps36p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.10.10.10: no description SMART SM00547: Zinc finger domain Pfam PF04157: EAP30 Pfam PF11605: Vps36_ESCRT-II PANTHER PTHR13128:SF3: GB DEF: VPS36P PANTHER PTHR13128: FAMILY NOT NAMED SUPERFAMILY SSF50729: PH domain-like |
| Sst2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00049: Domain found in Dishevelled, Egl-10, and Ple SMART SM00315: Regulator of G protein signalling domain Pfam PF00615: RGS Pfam PF00610: DEP PANTHER PTHR10845:SF95: ABR176CP PANTHER PTHR10845: REGULATOR OF G PROTEIN SIGNALING SUPERFAMILY SSF48097: Regulator of G-protein signaling, RGS Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:1.10.167.10: no description |
| Nip1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a Pfam PF05470: eIF-3c_N Pfam PF01399: PCI PANTHER PTHR13937: EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 (EIF3S8)-RELATED |
| Fkh2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Pfam PF00250: Fork_head Pfam PF00498: FHA SUPERFAMILY SSF49879: SMAD/FHA domain PANTHER PTHR11829:SF50: SUBFAMILY NOT NAMED PANTHER PTHR11829: FAMILY NOT NAMED SMART SM00240: Forkhead associated domain SMART SM00339: FORKHEAD Gene3D G3DSA:2.60.200.20: no description Gene3D G3DSA:1.10.10.10: no description PRINTS PR00053: FORKHEAD |
| Rio2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SUPERFAMILY SSF56112: Protein kinase-like (PK-like) Gene3D G3DSA:1.10.10.10: no description Gene3D G3DSA:3.30.200.20: no description Gene3D G3DSA:1.10.510.10: no description Pfam PF01163: RIO1 Pfam PF09202: Rio2_N PANTHER PTHR10593:SF1: SERINE/THREONINE-PROTEIN KINASE RIO2 (RIO KINASE 2) PANTHER PTHR10593: SERINE/THREONINE-PROTEIN KINASE RIO SMART SM00090: RIO-like kinase |
| Rfa2p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Pfam PF01336: tRNA_anti Pfam PF08784: RPA_C PIR superfamily PIRSF036949: Replication protein A, RPA32 subunit PANTHER PTHR13989:SF7: SUBFAMILY NOT NAMED PANTHER PTHR13989: REPLICATION PROTEIN A-RELATED SUPERFAMILY SSF50249: Nucleic acid-binding proteins Gene3D G3DSA:2.40.50.140: no description Gene3D G3DSA:1.10.10.10: no description |
| Sfl1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PRINTS PR00056: HSFDOMAIN Pfam PF00447: HSF_DNA-bind Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR10015:SF44: FLOCCULATION SUPPRESSION PROTEIN PANTHER PTHR10015: HEAT SHOCK TRANSCRIPTION FACTOR SMART SM00415: heat shock factor |
| Snf8p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PIR superfamily PIRSF017215: ESCRT-2 complex, Vps22p/Eap30 subunit Pfam PF04157: EAP30 Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR12806:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12806: EAP30 SUBUNIT OF ELL COMPLEX |
| Hho1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00526: Domain in histone families PRINTS PR00624: HISTONEH5 Pfam PF00538: Linker_histone Gene3D G3DSA:1.10.10.10: no description PANTHER PTHR11467: HISTONE H1/H5 |
| Rec8p | PANTHER PTHR12585: SCC1 / RAD21 FAMILY MEMBER Gene3D G3DSA:1.10.10.580: no description Pfam PF04825: Rad21_Rec8_N |
PANTHER PTHR12585:SF8: DOUBLE-STRAND-BREAK REPAIR PROTEIN RAD21-LIKE PROTEIN 1 SOURCE:UNIPROTKB/SWISS |
| Fhl1p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
SMART SM00240: Forkhead associated domain SMART SM00339: FORKHEAD SUPERFAMILY SSF49879: SMAD/FHA domain Gene3D G3DSA:2.60.200.20: no description Gene3D G3DSA:1.10.10.10: no description Pfam PF00250: Fork_head Pfam PF00498: FHA PRINTS PR00053: FORKHEAD PANTHER PTHR11829:SF50: SUBFAMILY NOT NAMED PANTHER PTHR11829: FAMILY NOT NAMED |
| Rpn7p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
Gene3D G3DSA:1.25.40.10: no description Gene3D G3DSA:1.10.10.10: no description Pfam PF10602: RPN7 Pfam PF01399: PCI SMART SM00088: motif in proteasome subunits, Int-6, Nip-1 a PANTHER PTHR14145:SF1: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6 PANTHER PTHR14145: 26S PROTESOME SUBUNIT 6 |
| Rpc82p | SUPERFAMILY SSF46785: "Winged helix" DNA-binding domain |
PANTHER PTHR12949: RNA POLYMERASE III (DNA DIRECTED)-RELATED Pfam PF05645: RNA_pol_Rpc82 Pfam PF08221: HTH_9 |
This table lists domains/motifs that are unique to Mcd1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Mcd1p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Mcd1p | ||
|---|---|---|
| Database source | Accession number | Description |
| PANTHER | PTHR12585:SF10 | PREDICTED: SIMILAR TO REC8-LIKE 1 (YEAST) |
| Pfam | PF04824 | Rad21_Rec8 |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Mcd1p .
