RPO41/YFL036W Domains/Motifs and Signal Peptides 
To directly search external databases for Rpo41p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Rpo41p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rpo41p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Rpo41p | ||
|---|---|---|
| Protein | Motifs in common with Rpo41p | Other motifs in this protein (but not in Rpo41p ) |
| Yar009cp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
| Ybl005w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
| Ybl100w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs |
| Ybr012w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ycl019wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like |
| Ycl074wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF07727: RVT_2 PANTHER PTHR11439:SF127: PREDICTED PROTEIN (FRAGMENT) PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Pol3p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SMART SM00486: DNA polymerase type-B family Gene3D G3DSA:3.30.420.10: no description Gene3D G3DSA:3.90.1600.10: no description Gene3D G3DSA:1.10.287.690: no description PANTHER PTHR10322:SF11: DNA POLYMERASE DELTA CATALYTIC SUBUNIT PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT PRINTS PR00106: DNAPOLB SUPERFAMILY SSF53098: Ribonuclease H-like TIGRFAMs TIGR00592: pol2: DNA polymerase (pol2) Pfam PF00136: DNA_pol_B Pfam PF03104: DNA_pol_B_exo1 Pfam PF14260: zf-C4pol |
| Ydr034c-dp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ydr098c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve |
| Ydr210c-dp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
| Ydr210w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like |
| Ydr261c-dp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ydr261w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs |
| Din7p | Gene3D G3DSA:1.10.150.20: no description |
PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:3.40.50.1010: no description PANTHER PTHR11081:SF8: EXONUCLEASE 1 PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo |
| Ydr316w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ydr365w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve |
| Rad30p | Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF00817: IMS Pfam PF11799: IMS_C Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.1490.100: no description SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain PANTHER PTHR11076:SF9: GB DEF: DBH1P PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| Rad51p | Gene3D G3DSA:1.10.150.20: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47794: Rad51 N-terminal domain-like Pfam PF08423: Rad51 PIR superfamily PIRSF005856: DNA repair and recombination protein, Rad51 type SMART SM00382: ATPases associated with a variety of cellula Gene3D G3DSA:3.40.50.300: no description PANTHER PTHR22942:SF12: DNA REPAIR PROTEIN RAD51 PANTHER PTHR22942: RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER TIGRFAMs TIGR02239: recomb_RAD51: DNA repair protein RAD51 |
| Yer138cp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
| Yer160cp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Gene3D G3DSA:3.30.420.10: no description |
| Brr2p | Gene3D G3DSA:1.10.150.20: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF02889: Sec63 Pfam PF00270: DEAD Pfam PF00271: Helicase_C Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.3380.10: no description Gene3D G3DSA:2.60.40.150: no description PANTHER PTHR11752:SF7: U520 PANTHER PTHR11752: HELICASE SKI2W SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00611: Domain of unknown function in Sec63p, Brr2p SMART SM00973: Sec63 Brl domain |
| Dmc1p | Gene3D G3DSA:1.10.150.20: no description |
TIGRFAMs TIGR02238: recomb_DMC1: meiotic recombinase Dmc1 SMART SM00382: ATPases associated with a variety of cellula PANTHER PTHR22942:SF13: MEIOTIC RECOMBINATION PROTEIN DMC1 PANTHER PTHR22942: RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER Pfam PF08423: Rad51 Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47794: Rad51 N-terminal domain-like PIR superfamily PIRSF005856: DNA repair and recombination protein, Rad51 type |
| Yfl002w-ap | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs SUPERFAMILY SSF53098: Ribonuclease H-like |
| Ygr027w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ygr038c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve |
| Ygr109w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.420.10: no description SMART SM00343: zinc finger Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF00665: rve Pfam PF03732: Retrotrans_gag SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF50630: Acid proteases PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN |
| Ygr161c-dp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ygr161w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Rad2p | Gene3D G3DSA:1.10.150.20: no description |
Pfam PF00752: XPG_N Pfam PF00867: XPG_I Gene3D G3DSA:3.40.50.1010: no description PRINTS PR00853: XPGRADSUPER PRINTS PR00066: XRODRMPGMNTG PANTHER PTHR11081:SF13: DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS XERODERMA PIGMENTOSUM GROUP G-COMPL PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo TIGRFAMs TIGR00600: rad2: DNA excision repair protein (rad2) |
| Yhl009w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like |
| Yhr214c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Yil080wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.420.10: no description Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF00665: rve Pfam PF03732: Retrotrans_gag PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN SMART SM00343: zinc finger SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF50630: Acid proteases |
| Yil082w-ap | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF50630: Acid proteases Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF00665: rve Pfam PF03732: Retrotrans_gag SMART SM00343: zinc finger PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.420.10: no description |
| Yjl113wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like PANTHER PTHR11439:SF123: SUBFAMILY NOT NAMED PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Yjr027wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yjr029wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Rad27p | Gene3D G3DSA:1.10.150.20: no description |
Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo PRINTS PR00853: XPGRADSUPER PANTHER PTHR11081:SF9: FLAP ENDONUCLEASE-1 PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain |
| Ylr035c-ap | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ylr157c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ylr227w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ylr410w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs Gene3D G3DSA:3.30.420.10: no description |
| Yml039wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Yml045wp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve |
| Ymr045cp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like |
| Ymr050cp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ynl054w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Pol1p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Gene3D G3DSA:3.90.1600.10: no description Gene3D G3DSA:1.10.287.690: no description SUPERFAMILY SSF53098: Ribonuclease H-like SMART SM00486: DNA polymerase type-B family Pfam PF00136: DNA_pol_B Pfam PF08996: zf-DNA_Pol Pfam PF03104: DNA_pol_B_exo1 Pfam PF12254: DNA_pol_alpha_N PANTHER PTHR10322:SF3: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT PRINTS PR00106: DNAPOLB TIGRFAMs TIGR00592: pol2: DNA polymerase (pol2) |
| Pol2p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SMART SM00486: DNA polymerase type-B family Pfam PF08490: DUF1744 Pfam PF03104: DNA_pol_B_exo1 Pfam PF00136: DNA_pol_B Gene3D G3DSA:3.30.420.10: no description Gene3D G3DSA:1.10.287.690: no description SUPERFAMILY SSF53098: Ribonuclease H-like PANTHER PTHR10670:SF0: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A PANTHER PTHR10670: DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A |
| Ynl284c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description |
| Yol103w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve |
| Exo1p | Gene3D G3DSA:1.10.150.20: no description |
SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo Pfam PF00752: XPG_N Pfam PF00867: XPG_I PANTHER PTHR11081:SF8: EXONUCLEASE 1 PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain |
| Yor142w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Yor192c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like |
| Mip1p | Gene3D G3DSA:3.30.70.370: no description Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF56672: DNA/RNA polymerases |
PRINTS PR00867: DNAPOLG PANTHER PTHR10267:SF0: DNA POLYMERASE SUBUNIT GAMMA-1 PANTHER PTHR10267: DNA POLYMERASE SUBUNIT GAMMA-1 Pfam PF00476: DNA_pol_A PIR superfamily PIRSF000797: DNA-directed DNA polymerase, mitochondrial type SMART SM00482: DNA polymerase A domain SUPERFAMILY SSF53098: Ribonuclease H-like |
| Yor343w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve Pfam PF13976: gag_pre-integrs |
| Rev1p | SUPERFAMILY SSF56672: DNA/RNA polymerases Gene3D G3DSA:1.10.150.20: no description |
Pfam PF00817: IMS Pfam PF00533: BRCT Pfam PF11799: IMS_C PANTHER PTHR11076:SF13: TERMINAL DEOXYCYTIDYL TRANSFERASE REV1 PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER SUPERFAMILY SSF52113: BRCT domain SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain Gene3D G3DSA:3.40.50.10190: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.1490.100: no description SMART SM00292: breast cancer carboxy-terminal domain PIR superfamily PIRSF036573: DNA repair protein, Rev1 type |
| Rev3p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
SUPERFAMILY SSF53098: Ribonuclease H-like PRINTS PR00106: DNAPOLB PANTHER PTHR10322:SF5: DNA POLYMERASE ZETA CATALYTIC SUBUNIT PANTHER PTHR10322: DNA POLYMERASE CATALYTIC SUBUNIT Pfam PF00136: DNA_pol_B Pfam PF03104: DNA_pol_B_exo1 Pfam PF14260: zf-C4pol SMART SM00486: DNA polymerase type-B family Gene3D G3DSA:3.30.420.10: no description Gene3D G3DSA:3.90.1600.10: no description Gene3D G3DSA:1.10.287.690: no description |
| Ypl257w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ypr137c-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ypr158c-dp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON |
| Ypr158w-bp | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Pfam PF01021: TYA Pfam PF07727: RVT_2 Pfam PF00665: rve PANTHER PTHR11439: GAG-POL-RELATED RETROTRANSPOSON Gene3D G3DSA:3.30.420.10: no description SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF81995: beta-sandwich domain of Sec23/24 |
| Ai1p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
Gene3D G3DSA:1.20.210.10: no description SMART SM00507: HNH nucleases PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE) PANTHER PTHR19446: REVERSE TRANSCRIPTASES SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like Pfam PF00078: RVT_1 Pfam PF01348: Intron_maturas2 |
| Ai2p | SUPERFAMILY SSF56672: DNA/RNA polymerases |
PRINTS PR01165: CYCOXIDASEI PANTHER PTHR19446:SF107: PREDICTED: SIMILAR TO RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE) PANTHER PTHR19446: REVERSE TRANSCRIPTASES Gene3D G3DSA:1.20.210.10: no description SMART SM00507: HNH nucleases Pfam PF00078: RVT_1 Pfam PF01348: Intron_maturas2 Pfam PF00115: COX1 SUPERFAMILY SSF81442: Cytochrome c oxidase subunit I-like |
This table lists domains/motifs that are unique to Rpo41p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rpo41p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Rpo41p | ||
|---|---|---|
| Database source | Accession number | Description |
| Gene3D | G3DSA:1.10.1320.10 | no description |
| Gene3D | G3DSA:1.10.287.260 | no description |
| Gene3D | G3DSA:1.10.287.280 | no description |
| PANTHER | PTHR10102 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| Pfam | PF00940 | RNA_pol |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Rpo41p .
