ELF1/YKL160W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Elf1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Elf1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Elf1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Elf1p
Protein	Motifs in common with Elf1p	Other motifs in this protein (but not in Elf1p )
Rpc11p	SUPERFAMILY SSF57783: Zinc beta-ribbon	SMART SM00661: RNA polymerase subunit SMART SM00440: C2C2 Zinc finger Pfam PF01096: TFIIS_C Pfam PF02150: RNA_POL_M_15KD Gene3D G3DSA:2.20.25.10: no description PANTHER PTHR11239:SF2: DNA-DIRECTED RNA POLYMERASE III PANTHER PTHR11239: DNA-DIRECTED RNA POLYMERASE
Dst1p	SUPERFAMILY SSF57783: Zinc beta-ribbon	Pfam PF07500: TFIIS_M Pfam PF01096: TFIIS_C Pfam PF08711: Med26 PANTHER PTHR11477: TRANSCRIPTION ELONGATION FACTOR S-II SUPERFAMILY SSF46942: Elongation factor TFIIS domain 2 SUPERFAMILY SSF47676: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 PIR superfamily PIRSF006704: Transcription elongation factor, IIS type TIGRFAMs TIGR01385: TFSII: transcription elongation factor S-II Gene3D G3DSA:1.20.930.10: no description Gene3D G3DSA:1.10.472.30: no description Gene3D G3DSA:2.20.25.10: no description SMART SM00509: Domain in the N-terminus of transcription el SMART SM00510: Domain in the central regions of transcripti SMART SM00440: C2C2 Zinc finger
Rpb9p	SUPERFAMILY SSF57783: Zinc beta-ribbon	SMART SM00661: RNA polymerase subunit SMART SM00440: C2C2 Zinc finger Pfam PF02150: RNA_POL_M_15KD Pfam PF01096: TFIIS_C Gene3D G3DSA:2.20.25.10: no description PANTHER PTHR11239:SF1: DNA-DIRECTED RNA POLYMERASE II PANTHER PTHR11239: DNA-DIRECTED RNA POLYMERASE
Snt2p	SUPERFAMILY SSF57783: Zinc beta-ribbon	SUPERFAMILY SSF57903: FYVE/PHD zinc finger SUPERFAMILY SSF46689: Homeodomain-like SMART SM00439: Bromo adjacent homology domain SMART SM00249: PHD zinc finger SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF01426: BAH Pfam PF00628: PHD Pfam PF13832: zf-HC5HC2H_2 Gene3D G3DSA:3.30.40.10: no description PANTHER PTHR13793:SF12: PHD FINGER PROTEIN PANTHER PTHR13793: PHD FINGER PROTEINS
Brf1p	SUPERFAMILY SSF57783: Zinc beta-ribbon	PRINTS PR00685: TIFACTORIIB SMART SM00385: domain present in cyclins, TFIIB and Retinob Gene3D G3DSA:2.20.25.10: no description Gene3D G3DSA:1.10.472.10: no description Gene3D G3DSA:1.20.5.650: no description Pfam PF00382: TFIIB Pfam PF07741: BRF1 Pfam PF08271: TF_Zn_Ribbon PANTHER PTHR11618:SF4: TRANSCRIPTION FACTOR IIIB PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED SUPERFAMILY SSF47954: Cyclin-like
Rpa12p	SUPERFAMILY SSF57783: Zinc beta-ribbon	Gene3D G3DSA:2.20.25.10: no description PANTHER PTHR11239:SF3: DNA-DIRECTED RNA POLYMERASE I PANTHER PTHR11239: DNA-DIRECTED RNA POLYMERASE SMART SM00661: RNA polymerase subunit SMART SM00440: C2C2 Zinc finger Pfam PF01096: TFIIS_C Pfam PF02150: RNA_POL_M_15KD
Tfa1p	SUPERFAMILY SSF57783: Zinc beta-ribbon	PANTHER PTHR13097:SF3: GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1 PANTHER PTHR13097: TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT SMART SM00531: Transcription initiation factor IIE Pfam PF02002: TFIIE_alpha Pfam PF08271: TF_Zn_Ribbon Gene3D G3DSA:3.30.40.10: no description
Sua7p	SUPERFAMILY SSF57783: Zinc beta-ribbon	Gene3D G3DSA:2.20.25.10: no description Gene3D G3DSA:1.10.472.10: no description SUPERFAMILY SSF47954: Cyclin-like PRINTS PR00685: TIFACTORIIB SMART SM00385: domain present in cyclins, TFIIB and Retinob PANTHER PTHR11618:SF13: TRANSCRIPTION INITIATION FACTOR IIB PANTHER PTHR11618: TRANSCRIPTION INITIATION FACTOR IIB-RELATED Pfam PF00382: TFIIB Pfam PF08271: TF_Zn_Ribbon

Unique domains/motifs

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This table lists domains/motifs that are unique to Elf1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Elf1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Elf1p
Database source	Accession number	Description
PANTHER	PTHR20934	UNCHARACTERIZED
PANTHER	PTHR20934:SF0	SUBFAMILY NOT NAMED
Pfam	PF05129	Elf1

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Elf1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Elf1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Elf1p .