RAD27/YKL113C Domains/Motifs and Signal Peptides 
To directly search external databases for Rad27p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Rad27p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rad27p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Rad27p | ||
|---|---|---|
| Protein | Motifs in common with Rad27p | Other motifs in this protein (but not in Rad27p ) |
| Din7p | PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:3.40.50.1010: no description Gene3D G3DSA:1.10.150.20: no description PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo |
PANTHER PTHR11081:SF8: EXONUCLEASE 1 |
| Fcf1p | SUPERFAMILY SSF88723: PIN domain-like Gene3D G3DSA:3.40.50.1010: no description |
SMART SM00670: Large family of predicted nucleotide-binding Pfam PF04900: Fcf1 PANTHER PTHR12416: UNCHARACTERIZED |
| Rad30p | Gene3D G3DSA:1.10.150.20: no description |
Pfam PF00817: IMS Pfam PF11799: IMS_C Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.1490.100: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain PANTHER PTHR11076:SF9: GB DEF: DBH1P PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| Yen1p | Gene3D G3DSA:3.40.50.1010: no description SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain Pfam PF00867: XPG_I PRINTS PR00853: XPGRADSUPER |
PANTHER PTHR11081:SF12: NUCLEASE |
| Rad51p | Gene3D G3DSA:1.10.150.20: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47794: Rad51 N-terminal domain-like Pfam PF08423: Rad51 PIR superfamily PIRSF005856: DNA repair and recombination protein, Rad51 type SMART SM00382: ATPases associated with a variety of cellula Gene3D G3DSA:3.40.50.300: no description PANTHER PTHR22942:SF12: DNA REPAIR PROTEIN RAD51 PANTHER PTHR22942: RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER TIGRFAMs TIGR02239: recomb_RAD51: DNA repair protein RAD51 |
| Brr2p | Gene3D G3DSA:1.10.150.20: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases Pfam PF02889: Sec63 Pfam PF00270: DEAD Pfam PF00271: Helicase_C Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.3380.10: no description Gene3D G3DSA:2.60.40.150: no description PANTHER PTHR11752:SF7: U520 PANTHER PTHR11752: HELICASE SKI2W SMART SM00487: DEAD-like helicases superfamily SMART SM00490: helicase superfamily c-terminal domain SMART SM00611: Domain of unknown function in Sec63p, Brr2p SMART SM00973: Sec63 Brl domain |
| Dmc1p | Gene3D G3DSA:1.10.150.20: no description |
TIGRFAMs TIGR02238: recomb_DMC1: meiotic recombinase Dmc1 SMART SM00382: ATPases associated with a variety of cellula PANTHER PTHR22942:SF13: MEIOTIC RECOMBINATION PROTEIN DMC1 PANTHER PTHR22942: RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER Pfam PF08423: Rad51 Gene3D G3DSA:3.40.50.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF47794: Rad51 N-terminal domain-like PIR superfamily PIRSF005856: DNA repair and recombination protein, Rad51 type |
| Rpo41p | Gene3D G3DSA:1.10.150.20: no description |
PANTHER PTHR10102: DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL Gene3D G3DSA:1.10.1320.10: no description Gene3D G3DSA:1.10.287.260: no description Gene3D G3DSA:3.30.70.370: no description Gene3D G3DSA:1.10.287.280: no description Pfam PF00940: RNA_pol SUPERFAMILY SSF56672: DNA/RNA polymerases |
| Rad2p | Pfam PF00752: XPG_N Pfam PF00867: XPG_I Gene3D G3DSA:3.40.50.1010: no description Gene3D G3DSA:1.10.150.20: no description PRINTS PR00853: XPGRADSUPER PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo |
PRINTS PR00066: XRODRMPGMNTG PANTHER PTHR11081:SF13: DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS XERODERMA PIGMENTOSUM GROUP G-COMPL TIGRFAMs TIGR00600: rad2: DNA excision repair protein (rad2) |
| Nmd4p | Gene3D G3DSA:3.40.50.1010: no description |
ProDom PD112888: NMD4_YEAST_Q12129; SMART SM00670: Large family of predicted nucleotide-binding |
| Mkt1p | Gene3D G3DSA:3.40.50.1010: no description Pfam PF00752: XPG_N Pfam PF00867: XPG_I SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SUPERFAMILY SSF88723: PIN domain-like |
PANTHER PTHR32221:SF0: SUBFAMILY NOT NAMED PANTHER PTHR32221: FAMILY NOT NAMED Pfam PF12246: MKT1_C Pfam PF12247: MKT1_N |
| Dis3p | Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like |
SMART SM00670: Large family of predicted nucleotide-binding SMART SM00955: no description SMART SM00316: Ribosomal protein S1-like RNA-binding domain PANTHER PTHR23355:SF13: MITOTIC CONTROL PROTEIN DIS3 PANTHER PTHR23355: RIBONUCLEASE Pfam PF00773: RNB Pfam PF13638: PIN_4 |
| Utp23p | SUPERFAMILY SSF88723: PIN domain-like Gene3D G3DSA:3.40.50.1010: no description |
Pfam PF04900: Fcf1 PANTHER PTHR12416: UNCHARACTERIZED |
| Exo1p | SMART SM00485: Xeroderma pigmentosum G N-region SMART SM00484: Xeroderma pigmentosum G I-region SMART SM00279: Helix-hairpin-helix class 2 (Pol1 family) mo Pfam PF00752: XPG_N Pfam PF00867: XPG_I PANTHER PTHR11081: XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY PRINTS PR00853: XPGRADSUPER Gene3D G3DSA:3.40.50.1010: no description Gene3D G3DSA:1.10.150.20: no description SUPERFAMILY SSF88723: PIN domain-like SUPERFAMILY SSF47807: 5' to 3' exonuclease, C-terminal subdomain |
PANTHER PTHR11081:SF8: EXONUCLEASE 1 |
| Swt1p | Gene3D G3DSA:3.40.50.1010: no description SUPERFAMILY SSF88723: PIN domain-like |
SMART SM00670: Large family of predicted nucleotide-binding Pfam PF13638: PIN_4 PANTHER PTHR16161:SF0: SUBFAMILY NOT NAMED PANTHER PTHR16161: UNCHARACTERIZED |
| Mip1p | Gene3D G3DSA:1.10.150.20: no description |
PRINTS PR00867: DNAPOLG PANTHER PTHR10267:SF0: DNA POLYMERASE SUBUNIT GAMMA-1 PANTHER PTHR10267: DNA POLYMERASE SUBUNIT GAMMA-1 Pfam PF00476: DNA_pol_A PIR superfamily PIRSF000797: DNA-directed DNA polymerase, mitochondrial type SMART SM00482: DNA polymerase A domain Gene3D G3DSA:3.30.70.370: no description SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like |
| Rev1p | Gene3D G3DSA:1.10.150.20: no description |
Pfam PF00817: IMS Pfam PF00533: BRCT Pfam PF11799: IMS_C PANTHER PTHR11076:SF13: TERMINAL DEOXYCYTIDYL TRANSFERASE REV1 PANTHER PTHR11076: DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF52113: BRCT domain SUPERFAMILY SSF100879: Lesion bypass DNA polymerase (Y-family), little finger domain Gene3D G3DSA:3.40.50.10190: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.1490.100: no description SMART SM00292: breast cancer carboxy-terminal domain PIR superfamily PIRSF036573: DNA repair protein, Rev1 type |
This table lists domains/motifs that are unique to Rad27p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Rad27p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Rad27p | ||
|---|---|---|
| Database source | Accession number | Description |
| PANTHER | PTHR11081:SF9 | FLAP ENDONUCLEASE-1 |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Rad27p .
