NUP100/YKL068W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Nup100p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Nup100p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Nup100p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Nup100p
Protein	Motifs in common with Nup100p	Other motifs in this protein (but not in Nup100p )
Nup145p	SUPERFAMILY SSF82215: C-terminal autoproteolytic domain of nucleoporin nup98 Pfam PF04096: Nucleoporin2 Pfam PF13634: Nucleoporin_FG PANTHER PTHR23198: NUCLEOPORIN Gene3D G3DSA:3.30.1610.10: no description	Pfam PF12110: Nup96
Nup49p	Pfam PF13634: Nucleoporin_FG	PANTHER PTHR12347:SF6: ADL045WP PANTHER PTHR12347: FAMILY NOT NAMED
Nup57p	Pfam PF13634: Nucleoporin_FG	Pfam PF13874: Nup54 PANTHER PTHR13000:SF0: SUBFAMILY NOT NAMED PANTHER PTHR13000: NUCLEOPORIN P54
Nup116p	PANTHER PTHR23198: NUCLEOPORIN SUPERFAMILY SSF82215: C-terminal autoproteolytic domain of nucleoporin nup98 Gene3D G3DSA:3.30.1610.10: no description Pfam PF13634: Nucleoporin_FG Pfam PF04096: Nucleoporin2	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Nup100p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Nup100p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Nup100p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Nup100p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Nup100p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Nup100p .