PHD1/YKL043W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Phd1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Phd1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Phd1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Phd1p
Protein	Motifs in common with Phd1p	Other motifs in this protein (but not in Phd1p )
Mbp1p	Gene3D G3DSA:3.10.260.10: no description SUPERFAMILY SSF54616: DNA-binding domain of Mlu1-box binding protein MBP1 Pfam PF04383: KilA-N	Gene3D G3DSA:1.25.40.20: no description SMART SM00248: ankyrin repeats SUPERFAMILY SSF48403: Ankyrin repeat Pfam PF13637: Ank_4 Pfam PF00023: Ank
Swi4p	Pfam PF04383: KilA-N Gene3D G3DSA:3.10.260.10: no description SUPERFAMILY SSF54616: DNA-binding domain of Mlu1-box binding protein MBP1	Pfam PF00023: Ank Gene3D G3DSA:1.25.40.20: no description SMART SM00248: ankyrin repeats SUPERFAMILY SSF48403: Ankyrin repeat
Xbp1p	Gene3D G3DSA:3.10.260.10: no description SUPERFAMILY SSF54616: DNA-binding domain of Mlu1-box binding protein MBP1	none
Sok2p	Pfam PF04383: KilA-N Gene3D G3DSA:3.10.260.10: no description SUPERFAMILY SSF54616: DNA-binding domain of Mlu1-box binding protein MBP1	none

Unique domains/motifs

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This table lists domains/motifs that are unique to Phd1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Phd1p domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Phd1p .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Phd1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Phd1p .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Phd1p .