NDC80/YIL144W Domains/Motifs and Signal Peptides Help

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Ndc80p domain/motif information see the external links section.


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Shared domains/motifs


This table lists proteins that share domains/motifs in common with those found in Ndc80p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ndc80p domain/motif information see the external links section.

Last updated on 2013-12-16

Other Saccharomyces cerevisiae proteins that contain motifs found in Ndc80p
Protein Motifs in common with Ndc80p Other motifs in this protein (but not in Ndc80p )
Zip1p SUPERFAMILY SSF46579: Prefoldin
none
Spc110p SUPERFAMILY SSF46579: Prefoldin
PANTHER PTHR18937:SF67: PROTEIN NUF1
PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Gim4p SUPERFAMILY SSF46579: Prefoldin
PANTHER PTHR13303: PREFOLDIN SUBUNIT 2
Gene3D G3DSA:1.10.287.370: no description
Pfam PF01920: Prefoldin_2
Bud27p SUPERFAMILY SSF46579: Prefoldin
Gene3D G3DSA:1.10.287.370: no description
Pfam PF02996: Prefoldin
Pfam PF12927: DUF3835
Pac10p SUPERFAMILY SSF46579: Prefoldin
PANTHER PTHR12409: PREFOLDIN SUBUNIT 3
PIR superfamily PIRSF016396: Prefoldin, subunit 3
Pfam PF02996: Prefoldin
Gene3D G3DSA:1.10.287.370: no description
Myo1p SUPERFAMILY SSF46579: Prefoldin
PANTHER PTHR13140:SF23: MYOSIN HEAVY CHAIN, NONMUSCLE OR SMOOTH MUSCLE
PANTHER PTHR13140: MYOSIN
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
ProDom PD936484: Q806D4_9VIRU_Q806D4;
Gene3D G3DSA:3.40.50.300: no description
Gene3D G3DSA:4.10.270.10: no description
PRINTS PR00193: MYOSINHEAVY
Pfam PF00063: Myosin_head
SMART SM00242: Myosin. Large ATPases.
Pfd1p SUPERFAMILY SSF46579: Prefoldin
PANTHER PTHR20903: PREFOLDIN SUBUNIT 1-RELATED
Pfam PF01920: Prefoldin_2
Gene3D G3DSA:1.10.287.370: no description
Mlp1p SUPERFAMILY SSF46579: Prefoldin
SUPERFAMILY SSF46966: Spectrin repeat
PANTHER PTHR32483:SF1: SUBFAMILY NOT NAMED
PANTHER PTHR32483: FAMILY NOT NAMED
Pfam PF07926: TPR_MLP1_2
Smc4p SUPERFAMILY SSF46579: Prefoldin
Pfam PF02463: SMC_N
Pfam PF06470: SMC_hinge
PANTHER PTHR18937:SF13: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC4
PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Gene3D G3DSA:3.40.50.300: no description
SMART SM00968: SMC proteins Flexible Hinge Domain
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
SUPERFAMILY SSF75553: Smc hinge domain
Yke2p SUPERFAMILY SSF46579: Prefoldin
Pfam PF01920: Prefoldin_2
Gene3D G3DSA:1.10.287.370: no description
PANTHER PTHR21431:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR21431: PREFOLDIN SUBUNIT 6
Imh1p SUPERFAMILY SSF46579: Prefoldin
PANTHER PTHR18937:SF69: SUBFAMILY NOT NAMED
PANTHER PTHR18937: STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
SMART SM00755: golgin-97, RanBP2alpha,Imh1p and p230/golgin
Pfam PF01465: GRIP
Gim5p SUPERFAMILY SSF46579: Prefoldin
Gene3D G3DSA:1.10.287.370: no description
TIGRFAMs TIGR00293: TIGR00293: prefoldin, alpha subunit
PANTHER PTHR12674:SF0: SUBFAMILY NOT NAMED
PANTHER PTHR12674: PREFOLDIN SUBUNIT 5
Pfam PF02996: Prefoldin
Gim3p SUPERFAMILY SSF46579: Prefoldin
PIR superfamily PIRSF016477: Prefoldin, subunit 4
Gene3D G3DSA:1.10.287.370: no description
PANTHER PTHR21100:SF7: GB DEF: PREFOLDIN SUBUNIT 4
PANTHER PTHR21100: FAMILY NOT NAMED
Pfam PF01920: Prefoldin_2
Rad50p SUPERFAMILY SSF46579: Prefoldin
TIGRFAMs TIGR00606: rad50: rad50
PANTHER PTHR18867:SF11: RAD50
PANTHER PTHR18867: RAD50
Gene3D G3DSA:3.40.50.300: no description
Pfam PF13476: AAA_23
Pfam PF04423: Rad50_zn_hook
Pfam PF13558: SbcCD_C
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases
Slk19p SUPERFAMILY SSF46579: Prefoldin
Pfam PF12709: Kinetocho_Slk19

Unique domains/motifs


This table lists domains/motifs that are unique to Ndc80p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Ndc80p domain/motif information see the external links section.

Last updated on 2013-12-16

Domain/motifs that are unique to Ndc80p
Database source Accession number Description
PANTHER PTHR10643 KINETOCHORE PROTEIN NDC80
PANTHER PTHR10643:SF0 KINETOCHORE PROTEIN NDC80
Pfam PF03801 Ndc80_HEC

Transmembrane Domains


This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Ndc80p .

Signal Peptide(s)


This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Ndc80p .


The following external links can be used to directly search external databases for domain/motif information for Ndc80p .