YIL082W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Yil082wp domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Yil082wp , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yil082wp domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Yil082wp
Protein	Motifs in common with Yil082wp	Other motifs in this protein (but not in Yil082wp )
Air2p	SMART SM00343: zinc finger	PANTHER PTHR23002:SF10: ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN PANTHER PTHR23002: ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN SUPERFAMILY SSF57756: Retrovirus zinc finger-like domains Gene3D G3DSA:4.10.60.10: no description PIR superfamily PIRSF018162: Poly(A) polymerase complex, Air1/2 subunits Pfam PF00098: zf-CCHC
Ygr109w-ap	SMART SM00343: zinc finger Pfam PF03732: Retrotrans_gag PANTHER PTHR24559:SF74: SUBFAMILY NOT NAMED PANTHER PTHR24559: FAMILY NOT NAMED	none
Ygr109w-bp	SMART SM00343: zinc finger Pfam PF03732: Retrotrans_gag	Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.420.10: no description Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF00665: rve SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF50630: Acid proteases PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN
Air1p	SMART SM00343: zinc finger	PANTHER PTHR23002:SF10: ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN PANTHER PTHR23002: ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN SUPERFAMILY SSF57756: Retrovirus zinc finger-like domains Pfam PF00098: zf-CCHC Gene3D G3DSA:4.10.60.10: no description PIR superfamily PIRSF018162: Poly(A) polymerase complex, Air1/2 subunits
Yil080wp	Pfam PF03732: Retrotrans_gag SMART SM00343: zinc finger	Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.420.10: no description Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF00665: rve PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF50630: Acid proteases
Yil082w-ap	Pfam PF03732: Retrotrans_gag SMART SM00343: zinc finger	SUPERFAMILY SSF56672: DNA/RNA polymerases SUPERFAMILY SSF53098: Ribonuclease H-like SUPERFAMILY SSF50630: Acid proteases Pfam PF12384: Peptidase_A2B Pfam PF00078: RVT_1 Pfam PF00665: rve PANTHER PTHR10178:SF14: RETROVIRUS POLYPROTEIN PANTHER PTHR10178: GAG/POL/ENV POLYPROTEIN Gene3D G3DSA:3.10.10.10: no description Gene3D G3DSA:3.30.70.270: no description Gene3D G3DSA:3.30.420.10: no description
Mpe1p	SMART SM00343: zinc finger	SUPERFAMILY SSF57850: RING/U-box PANTHER PTHR15439:SF0: SUBFAMILY NOT NAMED PANTHER PTHR15439: RETINOBLASTOMA-BINDING PROTEIN 6 Gene3D G3DSA:3.30.40.10: no description Pfam PF08783: DWNN Pfam PF11789: zf-Nse
Msl5p	SMART SM00343: zinc finger	SMART SM00322: K homology RNA-binding domain Gene3D G3DSA:3.30.1370.10: no description Gene3D G3DSA:4.10.60.10: no description PANTHER PTHR11208:SF6: KH DOMAIN CONTAINING PROTEIN PANTHER PTHR11208: RNA-BINDING PROTEIN RELATED Pfam PF00098: zf-CCHC Pfam PF00013: KH_1 SUPERFAMILY SSF54791: Eukaryotic type KH-domain (KH-domain type I) SUPERFAMILY SSF57756: Retrovirus zinc finger-like domains SUPERFAMILY SSF49348: Clathrin adaptor appendage domain
Gis2p	SMART SM00343: zinc finger	Gene3D G3DSA:4.10.60.10: no description Pfam PF00098: zf-CCHC SUPERFAMILY SSF57756: Retrovirus zinc finger-like domains PANTHER PTHR23002: ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN

Unique domains/motifs

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This table lists domains/motifs that are unique to Yil082wp . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Yil082wp domain/motif information see the external links section.

Last updated on 2013-05-06

There are no unique domains/motifs predicted for Yil082wp .

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Yil082wp .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Yil082wp .

External Links

Jump to: top | Shared domains | Unique domains | Transmembrane domains | Signal peptide(s)

The following external links can be used to directly search external databases for domain/motif information for Yil082wp .