SSM4/YIL030C Domains/Motifs and Signal Peptides 
To directly search external databases for Ssm4p domain/motif information see the external links section.
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This table lists proteins that share domains/motifs in common with those found in Ssm4p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Ssm4p domain/motif information see the external links section.
Last updated on 2013-05-06
| Other Saccharomyces cerevisiae proteins that contain motifs found in Ssm4p | ||
|---|---|---|
| Protein | Motifs in common with Ssm4p | Other motifs in this protein (but not in Ssm4p ) |
| Vps8p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Gene3D G3DSA:2.130.10.10: no description PANTHER PTHR31202:SF0: SUBFAMILY NOT NAMED PANTHER PTHR31202: FAMILY NOT NAMED SUPERFAMILY SSF50978: WD40 repeat-like Pfam PF12816: Vps8 |
| Sea4p | Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR16453:SF11: WD REPEAT-CONTAINING PROTEIN YBL104C PANTHER PTHR16453: WD40 DOMAIN-CONTAINING PROTEIN SUPERFAMILY SSF50978: WD40 repeat-like Gene3D G3DSA:2.130.10.10: no description |
| Ubp14p | Gene3D G3DSA:3.30.40.10: no description |
SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z SMART SM00165: Ubiquitin associated domain Gene3D G3DSA:1.10.8.10: no description PIR superfamily PIRSF016308: Ubiquitin-specific protease (ubiquitin carboxyl-terminal hydrolase) SUPERFAMILY SSF54001: Cysteine proteinases SUPERFAMILY SSF46934: UBA-like PANTHER PTHR24006:SF175: HYPOTHETICAL PROTEIN PANTHER PTHR24006: FAMILY NOT NAMED Pfam PF00443: UCH Pfam PF02148: zf-UBP Pfam PF00627: UBA |
| Ybr062cp | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
SMART SM00184: Ring finger Pfam PF13639: zf-RING_2 |
| Rad16p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
PANTHER PTHR10799:SF62: DNA REPAIR HELICASE RAD5,16 PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Pfam PF00176: SNF2_N Pfam PF00271: Helicase_C Pfam PF00097: zf-C3HC4 Gene3D G3DSA:3.40.50.300: no description SMART SM00487: DEAD-like helicases superfamily SMART SM00184: Ring finger SMART SM00490: helicase superfamily c-terminal domain SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases |
| Rad18p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
TIGRFAMs TIGR00599: rad18: DNA repair protein rad18 Pfam PF00097: zf-C3HC4 Pfam PF02037: SAP PANTHER PTHR14134: E3 UBIQUITIN-PROTEIN LIGASE RAD18 SMART SM00184: Ring finger SMART SM00734: Rad18-like CCHC zinc finger SMART SM00513: Putative DNA-binding (bihelical) motif pred |
| Apc11p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
PANTHER PTHR11210:SF10: ZINC FINGER DOMAIN CONTAINING PROTEIN PANTHER PTHR11210: RING FINGER Pfam PF12861: zf-Apc11 |
| Bre1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
Pfam PF08647: BRE1 Pfam PF13923: zf-C3HC4_2 SMART SM00184: Ring finger PANTHER PTHR23163:SF0: SUBFAMILY NOT NAMED PANTHER PTHR23163: RING FINGER PROTEIN-RELATED |
| Ufd2p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR13931:SF2: UBIQUITINATION FACTOR E4B/UFD2(YEAST) PANTHER PTHR13931: UBIQUITINATION FACTOR E4 SMART SM00504: Modified RING finger domain Pfam PF10408: Ufd2P_core Pfam PF04564: U-box |
| San1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
Pfam PF13639: zf-RING_2 PANTHER PTHR12477:SF27: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR12477: SYNOVIOLIN-RELATED SMART SM00184: Ring finger |
| Rmd5p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF13445: zf-RING_LisH Pfam PF10607: CLTH SMART SM00668: C-terminal to LisH motif. PANTHER PTHR12170:SF3: SPORULATION PROTEIN RMD5-RELATED (GLUCOSE-INDUCED DEGRADATION PROTEIN 2) PANTHER PTHR12170: MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
| Pex10p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR23350: PEROXISOME ASSEMBLY PROTEIN 10 SMART SM00184: Ring finger Pfam PF04757: Pex2_Pex12 Pfam PF13923: zf-C3HC4_2 |
| Hel2p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF13920: zf-C3HC4_3 PANTHER PTHR22938:SF0: SUBFAMILY NOT NAMED PANTHER PTHR22938: ZINC FINGER PROTEIN 598 |
| Pib1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA SMART SM00184: Ring finger SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR18851:SF6: FYVE AND COILED-COIL DOMAIN CONTAINING 1 PANTHER PTHR18851: FYVE AND COILED-COIL DOMAIN CONTAINING 1 Pfam PF01363: FYVE Pfam PF13639: zf-RING_2 |
| Pep7p | Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR13510:SF9: VACUOLAR SEGREGATION PROTEIN PEP7 (VAC1 PROTEIN) PANTHER PTHR13510: FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA SUPERFAMILY SSF57903: FYVE/PHD zinc finger SUPERFAMILY SSF140125: Rabenosyn-5 Rab-binding domain-like Pfam PF01363: FYVE |
| Siz1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
Pfam PF14324: PINIT Pfam PF02891: zf-MIZ Pfam PF02037: SAP PANTHER PTHR10782:SF13: E3 SUMO-PROTEIN LIGASE PANTHER PTHR10782: ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN SUPERFAMILY SSF68906: SAP domain Gene3D G3DSA:1.10.720.30: no description SMART SM00513: Putative DNA-binding (bihelical) motif predi |
| Tfb3p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
PIR superfamily PIRSF003338: CDK-activating kinase assembly factor MAT1 Pfam PF06391: MAT1 PANTHER PTHR12683:SF4: TRANSCRIPTION/REPAIR FACTOR TFIIH PANTHER PTHR12683: FAMILY NOT NAMED TIGRFAMs TIGR00570: cdk7: CDK-activating kinase assembly factor MAT1 |
| Mms21p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF11789: zf-Nse PANTHER PTHR21330:SF1: UNCHARACTERIZED PANTHER PTHR21330: UNCHARACTERIZED |
| Jhd1p | Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF51197: Clavaminate synthase-like SMART SM00249: PHD zinc finger SMART SM00558: A domain family that is part of the cupin me PANTHER PTHR23123:SF0: SUBFAMILY NOT NAMED PANTHER PTHR23123: PHD/F-BOX CONTAINING PROTEIN Gene3D G3DSA:2.60.120.650: no description |
| Mot2p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF13893: RRM_5 Gene3D G3DSA:3.30.70.330: no description SUPERFAMILY SSF54928: RNA-binding domain, RBD PANTHER PTHR12603:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12603: CCR4-NOT TRANSCRIPTION COMPLEX RELATED SMART SM00361: RNA recognition motif |
| Slx8p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR12313: RNF5 SMART SM00184: Ring finger Pfam PF13923: zf-C3HC4_2 |
| Sad1p | Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF54001: Cysteine proteinases SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z PANTHER PTHR24006:SF87: SUBFAMILY NOT NAMED PANTHER PTHR24006: FAMILY NOT NAMED Pfam PF02148: zf-UBP Pfam PF00443: UCH |
| Fab1p | Gene3D G3DSA:3.30.40.10: no description |
Gene3D G3DSA:3.50.7.10: no description Gene3D G3DSA:3.30.800.10: no description Gene3D G3DSA:3.30.810.10: no description SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA SMART SM00330: Phosphatidylinositol phosphate kinases Pfam PF01504: PIP5K Pfam PF00118: Cpn60_TCP1 Pfam PF01363: FYVE SUPERFAMILY SSF56104: SAICAR synthase-like SUPERFAMILY SSF52029: GroEL apical domain-like SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR11353:SF14: FYVE FINGER-CONTAINING PHOSPHOINOSITIDE KINASE, FYV1 PANTHER PTHR11353: CHAPERONIN |
| Pib2p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF01363: FYVE PANTHER PTHR22835:SF51: PREDICTED: SIMILAR TO ENDOFIN PANTHER PTHR22835: ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN SUPERFAMILY SSF57903: FYVE/PHD zinc finger SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA |
| Snt2p | Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF57903: FYVE/PHD zinc finger SUPERFAMILY SSF46689: Homeodomain-like SUPERFAMILY SSF57783: Zinc beta-ribbon SMART SM00439: Bromo adjacent homology domain SMART SM00249: PHD zinc finger SMART SM00717: SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin Pfam PF01426: BAH Pfam PF00628: PHD Pfam PF13832: zf-HC5HC2H_2 PANTHER PTHR13793:SF12: PHD FINGER PROTEIN PANTHER PTHR13793: PHD FINGER PROTEINS |
| Etp1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
SMART SM00184: Ring finger SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z Pfam PF07576: BRAP2 Pfam PF02148: zf-UBP Pfam PF13639: zf-RING_2 ProDom PD017029: Q6Q5F9_YEAST_Q6Q5F9; PANTHER PTHR24007: FAMILY NOT NAMED |
| Yng2p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF12998: ING Pfam PF00628: PHD SMART SM00249: PHD zinc finger PANTHER PTHR10333: INHIBITOR OF GROWTH PROTEIN SUPERFAMILY SSF57903: FYVE/PHD zinc finger |
| Dma1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
Pfam PF00498: FHA Pfam PF13639: zf-RING_2 PANTHER PTHR15067:SF4: SUBFAMILY NOT NAMED PANTHER PTHR15067: FAMILY NOT NAMED SUPERFAMILY SSF49879: SMAD/FHA domain Gene3D G3DSA:2.60.200.20: no description SMART SM00240: Forkhead associated domain |
| Set4p | Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF82199: SET domain SUPERFAMILY SSF57903: FYVE/PHD zinc finger Gene3D G3DSA:2.170.270.10: no description Pfam PF00856: SET Pfam PF00628: PHD PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5 SMART SM00249: PHD zinc finger SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora |
| Far1p | Gene3D G3DSA:3.30.40.10: no description |
none |
| Jhd2p | Gene3D G3DSA:3.30.40.10: no description |
SMART SM00545: Small domain found in the jumonji family of SMART SM00249: PHD zinc finger SMART SM00558: A domain family that is part of the cupin me PANTHER PTHR10694:SF8: RETINOBLASTOMA BINDING PROTEIN-RELATED PANTHER PTHR10694: JUMONJI DOMAIN CONTAINING PROTEIN Pfam PF02373: JmjC Pfam PF02375: JmjN Pfam PF00628: PHD SUPERFAMILY SSF51197: Clavaminate synthase-like SUPERFAMILY SSF57903: FYVE/PHD zinc finger |
| Bye1p | Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF46942: Elongation factor TFIIS domain 2 SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR11477: TRANSCRIPTION ELONGATION FACTOR S-II Pfam PF07500: TFIIS_M Pfam PF00628: PHD Pfam PF07744: SPOC Gene3D G3DSA:1.10.472.30: no description SMART SM00249: PHD zinc finger SMART SM00510: Domain in the central regions of transcripti |
| Tfa1p | Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR13097:SF3: GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1 PANTHER PTHR13097: TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT SMART SM00531: Transcription initiation factor IIE Pfam PF02002: TFIIE_alpha Pfam PF08271: TF_Zn_Ribbon SUPERFAMILY SSF57783: Zinc beta-ribbon |
| Tul1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
Pfam PF13639: zf-RING_2 SMART SM00184: Ring finger PANTHER PTHR22764:SF26: SUBFAMILY NOT NAMED PANTHER PTHR22764: RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). |
| Mpe1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SMART SM00343: zinc finger PANTHER PTHR15439:SF0: SUBFAMILY NOT NAMED PANTHER PTHR15439: RETINOBLASTOMA-BINDING PROTEIN 6 Pfam PF08783: DWNN Pfam PF11789: zf-Nse |
| Hel1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
SMART SM00184: Ring finger SMART SM00647: In Between Ring fingers Pfam PF01485: IBR Pfam PF00097: zf-C3HC4 PANTHER PTHR11685:SF14: GB DEF: HYPOTHETICAL 63.6 KDA PROTEIN IN YPT52-GCN3 INTERGENIC REGION PANTHER PTHR11685: ARIADNE RING ZINC FINGER |
| Set3p | Gene3D G3DSA:3.30.40.10: no description |
SMART SM00249: PHD zinc finger SMART SM00317: SET (Su(var)3-9, Enhancer-of-zeste, Trithora Pfam PF00628: PHD Pfam PF00856: SET SUPERFAMILY SSF82199: SET domain SUPERFAMILY SSF57903: FYVE/PHD zinc finger Gene3D G3DSA:2.170.270.10: no description PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5 |
| Prp19p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
PANTHER PTHR13889:SF1: PRE-MRNA SPLICING FACTOR PRP19, YEAST PANTHER PTHR13889: PRE-MRNA SPLICING FACTOR PRP19-RELATED Gene3D G3DSA:2.130.10.10: no description SUPERFAMILY SSF50978: WD40 repeat-like Pfam PF08606: Prp19 SMART SM00504: Modified RING finger domain |
| Rad5p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PANTHER PTHR10799:SF234: SUBFAMILY NOT NAMED PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Pfam PF00176: SNF2_N Pfam PF08797: HIRAN Pfam PF00271: Helicase_C Pfam PF13923: zf-C3HC4_2 SMART SM00910: no description SMART SM00487: DEAD-like helicases superfamily SMART SM00184: Ring finger SMART SM00490: helicase superfamily c-terminal domain Gene3D G3DSA:3.40.50.300: no description |
| Ioc2p | Gene3D G3DSA:3.30.40.10: no description |
none |
| Pep3p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF05131: Pep3_Vps18 Pfam PF00637: Clathrin Pfam PF10367: Vps39_2 SMART SM00299: Clathrin heavy chain repeat homology PANTHER PTHR23323:SF29: PREDICTED: SIMILAR TO VACUOLAR PROTEIN SORTING PROTEIN 18 PANTHER PTHR23323: VACUOLAR MEMBRANE PROTEIN RELATED |
| Irc20p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
SMART SM00487: DEAD-like helicases superfamily SMART SM00184: Ring finger SMART SM00490: helicase superfamily c-terminal domain Gene3D G3DSA:3.40.50.300: no description Pfam PF00176: SNF2_N Pfam PF13923: zf-C3HC4_2 SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases PANTHER PTHR10799:SF233: SUBFAMILY NOT NAMED PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED |
| Cwc24p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF90229: CCCH zinc finger Pfam PF13923: zf-C3HC4_2 Pfam PF00642: zf-CCCH SMART SM00356: zinc finger SMART SM00184: Ring finger Gene3D G3DSA:4.10.1000.10: no description PANTHER PTHR12930: ZINC FINGER PROTEIN 183 |
| Cst9p | SUPERFAMILY SSF57850: RING/U-box |
Pfam PF02891: zf-MIZ PANTHER PTHR22663:SF10: UNCHARACTERIZED PANTHER PTHR22663: UNCHARACTERIZED |
| Mag2p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF13923: zf-C3HC4_2 PANTHER PTHR12983:SF6: SUBFAMILY NOT NAMED PANTHER PTHR12983: FAMILY NOT NAMED SMART SM00184: Ring finger |
| Itt1p | SUPERFAMILY SSF57850: RING/U-box |
Pfam PF01485: IBR PANTHER PTHR11685:SF58: PUTATIVE UNCHARACTERIZED PROTEIN PANTHER PTHR11685: ARIADNE RING ZINC FINGER SMART SM00184: Ring finger SMART SM00647: In Between Ring fingers |
| Pex12p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF04757: Pex2_Pex12 PANTHER PTHR12888:SF0: SUBFAMILY NOT NAMED PANTHER PTHR12888: PEROXISOME ASSEMBLY PROTEIN 12 (PEROXIN-12) |
| Rco1p | Gene3D G3DSA:3.30.40.10: no description |
SMART SM00249: PHD zinc finger SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR25462:SF4: SUBFAMILY NOT NAMED PANTHER PTHR25462: FAMILY NOT NAMED Pfam PF00628: PHD |
| Ecm5p | Gene3D G3DSA:3.30.40.10: no description |
Gene3D G3DSA:1.10.150.60: no description PANTHER PTHR10694:SF8: RETINOBLASTOMA BINDING PROTEIN-RELATED PANTHER PTHR10694: JUMONJI DOMAIN CONTAINING PROTEIN SMART SM01014: ARID/BRIGHT DNA binding domain SMART SM00501: BRIGHT, ARID (A/T-rich interaction domain) d SMART SM00558: A domain family that is part of the cupin me SMART SM00249: PHD zinc finger Pfam PF01388: ARID Pfam PF00628: PHD SUPERFAMILY SSF46774: ARID-like SUPERFAMILY SSF57903: FYVE/PHD zinc finger |
| Ubp8p | Gene3D G3DSA:3.30.40.10: no description |
SMART SM00290: Ubiquitin Carboxyl-terminal Hydrolase-like z PANTHER PTHR24006:SF72: SUBFAMILY NOT NAMED PANTHER PTHR24006: FAMILY NOT NAMED SUPERFAMILY SSF54001: Cysteine proteinases Pfam PF00443: UCH Pfam PF02148: zf-UBP |
| Pep5p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF50978: WD40 repeat-like PANTHER PTHR23323:SF24: VACUOLAR MEMBRANE PROTEIN PEP5, 11 PANTHER PTHR23323: VACUOLAR MEMBRANE PROTEIN RELATED SMART SM00249: PHD zinc finger SMART SM00184: Ring finger Gene3D G3DSA:2.130.10.10: no description PIR superfamily PIRSF007860: Vacuolar protein sorting-associated protein 11 Pfam PF12451: VPS11_C |
| Rkr1p | SUPERFAMILY SSF57850: RING/U-box SMART SM00744: The RING-variant domain is a C4HC3 zinc-fing Gene3D G3DSA:3.30.40.10: no description |
Pfam PF13639: zf-RING_2 SUPERFAMILY SSF48371: ARM repeat PANTHER PTHR12389: ZINC FINGER PROTEIN 294 |
| Pho23p | Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR10333: INHIBITOR OF GROWTH PROTEIN SUPERFAMILY SSF57903: FYVE/PHD zinc finger Pfam PF12998: ING Pfam PF00628: PHD SMART SM00249: PHD zinc finger |
| Dma2p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF49879: SMAD/FHA domain Pfam PF00498: FHA PANTHER PTHR15067:SF5: RING FINGER PROTEIN YNL116W PANTHER PTHR15067: FAMILY NOT NAMED SMART SM00240: Forkhead associated domain Gene3D G3DSA:2.60.200.20: no description |
| Ncs2p | Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR20882:SF3: ACR271CP PANTHER PTHR20882: FAMILY NOT NAMED Pfam PF10288: DUF2392 |
| Vps27p | Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF48464: ENTH/VHS domain SUPERFAMILY SSF57903: FYVE/PHD zinc finger SMART SM00288: Domain present in VPS-27, Hrs and STAM SMART SM00064: Protein present in Fab1, YOTB, Vac1, and EEA SMART SM00726: Ubiquitin-interacting motif. Gene3D G3DSA:1.25.40.90: no description PIR superfamily PIRSF036956: Ubiquitin binding protein, Hrs/Vps27 type PANTHER PTHR13856:SF8: VACUOLAR PROTEIN SORTING-ASSOCIATED (VPS27) PANTHER PTHR13856: VHS DOMAIN CONTAINING PROTEIN FAMILY Pfam PF00790: VHS Pfam PF01363: FYVE |
| Hrd1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
PANTHER PTHR12477:SF7: SYNOVIOLIN-RELATED PANTHER PTHR12477: SYNOVIOLIN-RELATED Pfam PF13639: zf-RING_2 SMART SM00184: Ring finger |
| Psh1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
PANTHER PTHR25462:SF189: PREDICTED: HYPOTHETICAL PROTEIN, PARTIAL PANTHER PTHR25462: FAMILY NOT NAMED SMART SM00184: Ring finger Pfam PF13923: zf-C3HC4_2 |
| Hrt1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR11210:SF2: RING FINGER 1 PANTHER PTHR11210: RING FINGER Pfam PF12678: zf-rbx1 |
| Rtc1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SMART SM00320: WD40 repeats SUPERFAMILY SSF50978: WD40 repeat-like Gene3D G3DSA:2.130.10.10: no description Pfam PF00400: WD40 PANTHER PTHR22850:SF4: PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR PANTHER PTHR22850: WD40 REPEAT FAMILY |
| Yng1p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF00628: PHD SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR10333: INHIBITOR OF GROWTH PROTEIN SMART SM00249: PHD zinc finger |
| Nfi1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF14324: PINIT Pfam PF02891: zf-MIZ Pfam PF02037: SAP PANTHER PTHR10782:SF13: E3 SUMO-PROTEIN LIGASE PANTHER PTHR10782: ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN Gene3D G3DSA:1.10.720.30: no description SMART SM00513: Putative DNA-binding (bihelical) motif predi SUPERFAMILY SSF68906: SAP domain |
| Uls1p | SUPERFAMILY SSF57850: RING/U-box Gene3D G3DSA:3.30.40.10: no description |
SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SMART SM00487: DEAD-like helicases superfamily SMART SM00184: Ring finger SMART SM00490: helicase superfamily c-terminal domain Pfam PF00176: SNF2_N Pfam PF00271: Helicase_C Gene3D G3DSA:3.40.50.300: no description PANTHER PTHR10799:SF231: SUBFAMILY NOT NAMED PANTHER PTHR10799: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED |
| Spp1p | Gene3D G3DSA:3.30.40.10: no description |
PANTHER PTHR12321:SF4: BIP2 PROTEIN PANTHER PTHR12321: CPG BINDING PROTEIN SUPERFAMILY SSF57903: FYVE/PHD zinc finger SMART SM00249: PHD zinc finger Pfam PF00628: PHD |
| Cti6p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF00628: PHD SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR16286: MIXED-LINEAGE LEUKEMIA 5, MLL5 SMART SM00249: PHD zinc finger |
| Nto1p | Gene3D G3DSA:3.30.40.10: no description |
Pfam PF13832: zf-HC5HC2H_2 Pfam PF13831: PHD_2 Pfam PF10513: EPL1 SUPERFAMILY SSF57903: FYVE/PHD zinc finger SMART SM00249: PHD zinc finger PANTHER PTHR13793:SF39: PHD-FINGER, PUTATIVE PANTHER PTHR13793: PHD FINGER PROTEINS |
| Asr1p | Gene3D G3DSA:3.30.40.10: no description SUPERFAMILY SSF57850: RING/U-box |
Pfam PF13639: zf-RING_2 SMART SM00184: Ring finger SUPERFAMILY SSF57903: FYVE/PHD zinc finger PANTHER PTHR22764:SF27: ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN PANTHER PTHR22764: RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). |
This table lists domains/motifs that are unique to Ssm4p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.
To directly search external databases for Ssm4p domain/motif information see the external links section.
Last updated on 2013-05-06
| Domain/motifs that are unique to Ssm4p | ||
|---|---|---|
| Database source | Accession number | Description |
| PANTHER | PTHR13145 | SSM4 PROTEIN |
| PANTHER | PTHR13145:SF0 | SUBFAMILY NOT NAMED |
| Pfam | PF12906 | RINGv |
This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.
| Predicted Transmembane Domain(s) (Click on image for expanded interactive view) | Amino Acid Coordinate(s) |
|---|---|
| 130 - 152 | |
| 201 - 218 | |
| 469 - 491 | |
| 495 - 517 | |
| 626 - 648 | |
| 668 - 690 | |
| 735 - 757 | |
| 965 - 987 | |
| 989 - 1008 | |
| 1023 - 1040 | |
| 1112 - 1134 | |
| 1171 - 1193 | |
| 1215 - 1234 | |
| 1269 - 1291 |
This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.
The following external links can be used to directly search external databases for domain/motif information for Ssm4p .
