URM1/YIL008W Domains/Motifs and Signal Peptides

This page contains a summary of information for Saccharomyces cerevisiae proteins which share domains/motifs in common with the target protein, listed above. Coordinate information for proteins with predicted transmembrane domains and signal peptides is also listed.

To directly search external databases for Urm1p domain/motif information see the external links section.

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Shared domains/motifs

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This table lists proteins that share domains/motifs in common with those found in Urm1p , and a list of domains/motifs that are not shared. Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Urm1p domain/motif information see the external links section.

Last updated on 2013-05-06

Other Saccharomyces cerevisiae proteins that contain motifs found in Urm1p
Protein	Motifs in common with Urm1p	Other motifs in this protein (but not in Urm1p )
Ola1p	Gene3D G3DSA:3.10.20.30: no description	TIGRFAMs TIGR00092: TIGR00092: GTP-binding protein YchF PIR superfamily PIRSF006641: Predicted GTP-dependent nucleic acid-binding protein, EngD type PANTHER PTHR23305:SF3: GTP-BINDING PROTEIN-RELATED PANTHER PTHR23305: GTP-BINDING PROTEIN-RELATED Pfam PF06071: YchF-GTPase_C Pfam PF01926: MMR_HSR1 PRINTS PR00326: GTP1OBG Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.150.300: no description SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF81271: TGS-like
Ylf2p	Gene3D G3DSA:3.10.20.30: no description	PRINTS PR00326: GTP1OBG Gene3D G3DSA:3.40.50.300: no description Gene3D G3DSA:1.10.150.300: no description TIGRFAMs TIGR00092: TIGR00092: GTP-binding protein YchF PANTHER PTHR23305:SF2: GTP-BINDING PROTEIN YLF2-RELATED PANTHER PTHR23305: GTP-BINDING PROTEIN-RELATED Pfam PF06071: YchF-GTPase_C Pfam PF01926: MMR_HSR1 PIR superfamily PIRSF006641: Predicted GTP-dependent nucleic acid-binding protein, EngD type SUPERFAMILY SSF52540: P-loop containing nucleoside triphosphate hydrolases SUPERFAMILY SSF81271: TGS-like
Ths1p	Gene3D G3DSA:3.10.20.30: no description	SUPERFAMILY SSF55681: Class II aaRS and biotin synthetases SUPERFAMILY SSF55186: ThrRS/AlaRS common domain SUPERFAMILY SSF52954: Class II aaRS ABD-related SUPERFAMILY SSF81271: TGS-like SMART SM00863: Threonyl and Alanyl tRNA synthetase second a TIGRFAMs TIGR00418: thrS: threonine--tRNA ligase PRINTS PR01047: TRNASYNTHTHR PANTHER PTHR11451:SF5: THREONYL-TRNA SYNTHETASE PANTHER PTHR11451: TRNA SYNTHETASE-RELATED Gene3D G3DSA:3.30.980.10: no description Gene3D G3DSA:3.30.54.20: no description Gene3D G3DSA:3.30.930.10: no description Gene3D G3DSA:3.40.50.800: no description Pfam PF00587: tRNA-synt_2b Pfam PF03129: HGTP_anticodon Pfam PF02824: TGS Pfam PF07973: tRNA_SAD
Sdh2p	Gene3D G3DSA:3.10.20.30: no description	TIGRFAMs TIGR00384: dhsB: succinate dehydrogenase and fumarate reducta Gene3D G3DSA:1.10.1060.10: no description Pfam PF13085: Fer2_3 Pfam PF13534: Fer4_17 SUPERFAMILY SSF46548: alpha-helical ferredoxin SUPERFAMILY SSF54292: 2Fe-2S ferredoxin-like PANTHER PTHR11921: SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN
Yah1p	Gene3D G3DSA:3.10.20.30: no description	PRINTS PR00355: ADRENODOXIN Pfam PF00111: Fer2 SUPERFAMILY SSF54292: 2Fe-2S ferredoxin-like PANTHER PTHR23426:SF1: ADRENODOXIN PANTHER PTHR23426: FERREDOXIN/ADRENODOXIN

Unique domains/motifs

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This table lists domains/motifs that are unique to Urm1p . Domains/Motifs were determined by comparing the Saccharomyces cerevisiae protein sequence against the sequences in the Interpro database, using the Interpro scan (iprscan) program. The Interpro database integrates motif and domain information from PROSITE, PRINTS, Pfam, ProDom, SMART, TIGRFAMs, PIR SUPERFAMILY, Gene3D, and PANTHER databases.

To directly search external databases for Urm1p domain/motif information see the external links section.

Last updated on 2013-05-06

Domain/motifs that are unique to Urm1p
Database source	Accession number	Description
PIR superfamily	PIRSF037379	Ubiquitin-related modifier 1
PANTHER	PTHR14986	RURM1 PROTEIN
PANTHER	PTHR14986:SF2	SUBFAMILY NOT NAMED
Pfam	PF09138	Urm1
SUPERFAMILY	SSF54285	MoaD/ThiS

Transmembrane Domains

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This table lists coordinates for transmembrane domain(s), as predicted by version 2.0 using TMHMM, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU.

There are no transmembrane domains predicted for Urm1p .

Signal Peptide(s)

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This table lists coordinates for signal peptide(s), as predicted using version 3.0 of SignalP, an application available at The Center for Biological Sequence Analysis at the Technical University of Denmark DTU. Cleavage typically occurs on the carboxy side of the predicted site.

There are no signal peptide(s) predicted for Urm1p .

External Links

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The following external links can be used to directly search external databases for domain/motif information for Urm1p .